Experiment: Formate/Acetate-Sulfite (60/1-20 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nifA-2 and DVUA0144 are separated by 214 nucleotides DVUA0144 and DORF2315 are separated by 499 nucleotides DORF2315 and DVUA0145 are separated by 25 nucleotides
DVUA0143: nifA-2 - nif-specific regulatory protein (TIGR), at 184,786 to 186,333
nifA-2
DVUA0144: DVUA0144 - hypothetical protein (TIGR), at 186,548 to 186,691
DVUA0144
DORF2315: DORF2315 - no description, at 187,191 to 187,322
DORF2315
DVUA0145: DVUA0145 - conserved domain protein (TIGR), at 187,348 to 191,274
DVUA0145
Position (kb) 186
187 Strain fitness (log2 ratio) -1
0
1 at 185.587 kb on - strand, within nifA-2 at 185.638 kb on - strand, within nifA-2 at 185.665 kb on + strand, within nifA-2 at 185.673 kb on - strand, within nifA-2 at 185.700 kb on + strand, within nifA-2 at 185.837 kb on + strand, within nifA-2 at 185.906 kb on + strand, within nifA-2 at 186.033 kb on - strand, within nifA-2 at 186.053 kb on + strand, within nifA-2 at 186.053 kb on + strand, within nifA-2 at 186.053 kb on + strand, within nifA-2 at 186.053 kb on + strand, within nifA-2 at 186.053 kb on + strand, within nifA-2 at 186.053 kb on + strand, within nifA-2 at 186.061 kb on - strand, within nifA-2 at 186.068 kb on + strand, within nifA-2 at 186.068 kb on + strand, within nifA-2 at 186.314 kb on - strand at 186.370 kb on - strand at 186.466 kb on + strand at 186.497 kb on + strand at 186.527 kb on + strand at 186.547 kb on - strand at 186.629 kb on + strand, within DVUA0144 at 186.631 kb on + strand, within DVUA0144 at 186.699 kb on + strand at 186.726 kb on - strand at 186.735 kb on + strand at 186.759 kb on + strand at 186.773 kb on - strand at 186.787 kb on + strand at 186.805 kb on - strand at 186.845 kb on + strand at 186.850 kb on + strand at 186.858 kb on - strand at 186.920 kb on + strand at 186.975 kb on + strand at 186.977 kb on - strand at 187.014 kb on + strand at 187.099 kb on - strand at 187.109 kb on - strand at 187.288 kb on - strand, within DORF2315 at 187.294 kb on + strand, within DORF2315 at 187.358 kb on + strand at 187.405 kb on - strand at 187.416 kb on + strand at 187.530 kb on - strand at 187.541 kb on - strand at 187.630 kb on - strand at 187.675 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/1-20 mM) remove 185,587 - nifA-2 DVUA0143 0.52 +0.1 185,638 - nifA-2 DVUA0143 0.55 -0.2 185,665 + nifA-2 DVUA0143 0.57 -0.1 185,673 - nifA-2 DVUA0143 0.57 -0.1 185,700 + nifA-2 DVUA0143 0.59 +0.0 185,837 + nifA-2 DVUA0143 0.68 +0.8 185,906 + nifA-2 DVUA0143 0.72 +0.0 186,033 - nifA-2 DVUA0143 0.81 -0.1 186,053 + nifA-2 DVUA0143 0.82 +0.0 186,053 + nifA-2 DVUA0143 0.82 -0.2 186,053 + nifA-2 DVUA0143 0.82 -0.8 186,053 + nifA-2 DVUA0143 0.82 -0.8 186,053 + nifA-2 DVUA0143 0.82 -0.1 186,053 + nifA-2 DVUA0143 0.82 -0.6 186,061 - nifA-2 DVUA0143 0.82 -1.2 186,068 + nifA-2 DVUA0143 0.83 -0.2 186,068 + nifA-2 DVUA0143 0.83 -0.1 186,314 - -0.9 186,370 - -0.3 186,466 + -0.7 186,497 + +0.1 186,527 + -0.5 186,547 - +0.2 186,629 + DVUA0144 0.56 -0.2 186,631 + DVUA0144 0.58 -0.4 186,699 + +0.6 186,726 - -0.1 186,735 + +0.3 186,759 + -0.2 186,773 - +0.0 186,787 + -0.1 186,805 - -0.2 186,845 + -0.8 186,850 + +1.2 186,858 - -0.2 186,920 + -0.5 186,975 + -0.5 186,977 - +0.4 187,014 + -0.0 187,099 - +0.0 187,109 - +0.7 187,288 - DORF2315 0.73 -0.5 187,294 + DORF2315 0.78 +0.0 187,358 + +0.9 187,405 - -0.9 187,416 + -0.8 187,530 - -0.8 187,541 - +0.4 187,630 - +0.7 187,675 - -0.6
Or see this region's nucleotide sequence