Experiment: Formate/Acetate-Sulfite (60/1-20 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glnB-2 and glnB-3 are separated by 9 nucleotides glnB-3 and nifH are separated by 282 nucleotides nifH and nifV are separated by 757 nucleotides
DVUA0013: glnB-2 - nitrogen regulatory protein P-II (TIGR), at 17,863 to 18,258
glnB-2
DVUA0014: glnB-3 - nitrogen regulatory protein P-II (TIGR), at 18,268 to 18,594
glnB-3
DVUA0015: nifH - nitrogenase iron protein (TIGR), at 18,877 to 19,710
nifH
DVUA0016: nifV - homocitrate synthase (TIGR), at 20,468 to 21,622
nifV
Position (kb) 18
19
20 Strain fitness (log2 ratio) -1
0
1 at 17.919 kb on - strand, within glnB-2 at 17.997 kb on + strand, within glnB-2 at 18.002 kb on + strand, within glnB-2 at 18.061 kb on - strand, within glnB-2 at 18.085 kb on - strand, within glnB-2 at 18.186 kb on + strand, within glnB-2 at 18.242 kb on - strand at 18.282 kb on + strand at 18.296 kb on + strand at 18.296 kb on + strand at 18.296 kb on + strand at 18.304 kb on - strand, within glnB-3 at 18.304 kb on - strand, within glnB-3 at 18.304 kb on - strand, within glnB-3 at 18.304 kb on - strand, within glnB-3 at 18.353 kb on + strand, within glnB-3 at 18.370 kb on + strand, within glnB-3 at 18.378 kb on - strand, within glnB-3 at 18.404 kb on + strand, within glnB-3 at 18.404 kb on + strand, within glnB-3 at 18.431 kb on + strand, within glnB-3 at 18.439 kb on - strand, within glnB-3 at 18.439 kb on - strand, within glnB-3 at 18.466 kb on - strand, within glnB-3 at 18.473 kb on - strand, within glnB-3 at 18.492 kb on - strand, within glnB-3 at 18.506 kb on - strand, within glnB-3 at 18.527 kb on + strand, within glnB-3 at 18.535 kb on - strand, within glnB-3 at 18.559 kb on - strand, within glnB-3 at 18.747 kb on + strand at 18.755 kb on - strand at 18.849 kb on - strand at 18.884 kb on + strand at 18.922 kb on - strand at 18.994 kb on - strand, within nifH at 19.054 kb on + strand, within nifH at 19.273 kb on - strand, within nifH at 19.273 kb on - strand, within nifH at 19.322 kb on + strand, within nifH at 19.405 kb on + strand, within nifH at 19.413 kb on - strand, within nifH at 19.429 kb on + strand, within nifH at 19.429 kb on + strand, within nifH at 19.440 kb on + strand, within nifH at 19.448 kb on - strand, within nifH at 19.448 kb on - strand, within nifH at 19.540 kb on - strand, within nifH at 19.600 kb on + strand, within nifH at 19.600 kb on + strand, within nifH at 19.641 kb on + strand at 19.652 kb on - strand at 19.732 kb on - strand at 19.780 kb on + strand at 19.801 kb on - strand at 19.838 kb on + strand at 19.927 kb on - strand at 19.938 kb on - strand at 19.942 kb on + strand at 19.942 kb on + strand at 19.942 kb on + strand at 19.942 kb on + strand at 19.942 kb on + strand at 19.942 kb on + strand at 19.942 kb on + strand at 19.950 kb on - strand at 19.950 kb on - strand at 19.950 kb on - strand at 19.972 kb on - strand at 19.979 kb on + strand at 19.987 kb on - strand at 20.024 kb on + strand at 20.032 kb on - strand at 20.089 kb on - strand at 20.132 kb on - strand at 20.280 kb on - strand at 20.373 kb on + strand at 20.401 kb on + strand at 20.406 kb on + strand at 20.409 kb on - strand at 20.409 kb on - strand at 20.411 kb on + strand at 20.461 kb on + strand at 20.519 kb on + strand at 20.544 kb on + strand at 20.569 kb on + strand at 20.571 kb on - strand at 20.577 kb on - strand at 20.577 kb on - strand at 20.671 kb on - strand, within nifV at 20.699 kb on - strand, within nifV
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/1-20 mM) remove 17,919 - glnB-2 DVUA0013 0.14 -0.5 17,997 + glnB-2 DVUA0013 0.34 +0.1 18,002 + glnB-2 DVUA0013 0.35 -0.7 18,061 - glnB-2 DVUA0013 0.50 -0.3 18,085 - glnB-2 DVUA0013 0.56 +0.3 18,186 + glnB-2 DVUA0013 0.82 -0.4 18,242 - -0.4 18,282 + -0.0 18,296 + +0.1 18,296 + +0.3 18,296 + -0.3 18,304 - glnB-3 DVUA0014 0.11 -0.7 18,304 - glnB-3 DVUA0014 0.11 +0.8 18,304 - glnB-3 DVUA0014 0.11 +0.4 18,304 - glnB-3 DVUA0014 0.11 -0.9 18,353 + glnB-3 DVUA0014 0.26 +0.1 18,370 + glnB-3 DVUA0014 0.31 -0.5 18,378 - glnB-3 DVUA0014 0.34 +0.3 18,404 + glnB-3 DVUA0014 0.42 -0.4 18,404 + glnB-3 DVUA0014 0.42 +0.0 18,431 + glnB-3 DVUA0014 0.50 -0.2 18,439 - glnB-3 DVUA0014 0.52 -0.3 18,439 - glnB-3 DVUA0014 0.52 +0.3 18,466 - glnB-3 DVUA0014 0.61 -0.1 18,473 - glnB-3 DVUA0014 0.63 +1.0 18,492 - glnB-3 DVUA0014 0.69 -0.4 18,506 - glnB-3 DVUA0014 0.73 +0.2 18,527 + glnB-3 DVUA0014 0.79 +0.5 18,535 - glnB-3 DVUA0014 0.82 -0.1 18,559 - glnB-3 DVUA0014 0.89 -0.4 18,747 + -0.2 18,755 - -0.4 18,849 - +0.4 18,884 + -0.4 18,922 - -0.1 18,994 - nifH DVUA0015 0.14 -0.6 19,054 + nifH DVUA0015 0.21 -0.1 19,273 - nifH DVUA0015 0.47 -0.5 19,273 - nifH DVUA0015 0.47 +1.1 19,322 + nifH DVUA0015 0.53 +0.3 19,405 + nifH DVUA0015 0.63 -0.3 19,413 - nifH DVUA0015 0.64 +0.1 19,429 + nifH DVUA0015 0.66 -0.1 19,429 + nifH DVUA0015 0.66 +0.1 19,440 + nifH DVUA0015 0.68 +0.1 19,448 - nifH DVUA0015 0.68 -0.1 19,448 - nifH DVUA0015 0.68 -0.4 19,540 - nifH DVUA0015 0.79 -0.4 19,600 + nifH DVUA0015 0.87 +0.1 19,600 + nifH DVUA0015 0.87 +0.5 19,641 + -0.8 19,652 - -0.1 19,732 - +1.0 19,780 + -0.9 19,801 - +1.3 19,838 + -0.5 19,927 - -0.4 19,938 - +0.3 19,942 + -0.3 19,942 + -0.5 19,942 + -0.3 19,942 + -0.2 19,942 + -0.2 19,942 + -1.5 19,942 + +0.2 19,950 - +0.0 19,950 - -0.4 19,950 - -0.2 19,972 - -1.3 19,979 + -0.3 19,987 - -0.1 20,024 + +0.6 20,032 - +0.4 20,089 - -0.3 20,132 - -0.2 20,280 - -0.6 20,373 + +0.2 20,401 + -0.1 20,406 + +1.2 20,409 - -1.2 20,409 - -0.6 20,411 + -0.1 20,461 + -0.1 20,519 + -0.4 20,544 + +0.6 20,569 + +1.7 20,571 - +0.0 20,577 - -0.8 20,577 - -0.4 20,671 - nifV DVUA0016 0.18 +0.7 20,699 - nifV DVUA0016 0.20 +0.2
Or see this region's nucleotide sequence