Experiment: Formate/Acetate-Sulfite (60/1-20 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0718 and DVU0719 overlap by 4 nucleotides DVU0719 and DVU0720 overlap by 38 nucleotides DVU0720 and DVU0721 are separated by 139 nucleotides
DVU0718: DVU0718 - ISDvu2, transposase OrfA (TIGR), at 798,061 to 798,459
DVU0718
DVU0719: DVU0719 - ISDvu2, transposase OrfB (TIGR), at 798,456 to 799,298
DVU0719
DVU0720: DVU0720 - HAMP domain protein (TIGR), at 799,261 to 800,550
DVU0720
DVU0721: DVU0721 - sensory box histidine kinase (TIGR), at 800,690 to 803,455
DVU0721
Position (kb) 799
800
801 Strain fitness (log2 ratio) -2
-1
0
1 at 799.370 kb on - strand at 799.392 kb on + strand, within DVU0720 at 799.520 kb on - strand, within DVU0720 at 799.615 kb on + strand, within DVU0720 at 799.674 kb on + strand, within DVU0720 at 799.717 kb on + strand, within DVU0720 at 799.741 kb on + strand, within DVU0720 at 799.815 kb on + strand, within DVU0720 at 799.840 kb on + strand, within DVU0720 at 800.025 kb on + strand, within DVU0720 at 800.025 kb on + strand, within DVU0720 at 800.126 kb on + strand, within DVU0720 at 800.126 kb on + strand, within DVU0720 at 800.126 kb on + strand, within DVU0720 at 800.126 kb on + strand, within DVU0720 at 800.134 kb on - strand, within DVU0720 at 800.152 kb on + strand, within DVU0720 at 800.180 kb on + strand, within DVU0720 at 800.285 kb on - strand, within DVU0720 at 800.285 kb on - strand, within DVU0720 at 800.290 kb on - strand, within DVU0720 at 800.481 kb on + strand at 800.586 kb on + strand at 800.737 kb on + strand at 800.767 kb on - strand at 800.801 kb on - strand at 800.803 kb on + strand at 800.803 kb on + strand at 800.808 kb on + strand at 800.836 kb on - strand at 800.838 kb on + strand at 800.916 kb on + strand at 800.932 kb on + strand at 801.039 kb on + strand, within DVU0721 at 801.049 kb on + strand, within DVU0721 at 801.106 kb on + strand, within DVU0721 at 801.213 kb on + strand, within DVU0721 at 801.239 kb on - strand, within DVU0721 at 801.330 kb on + strand, within DVU0721 at 801.338 kb on - strand, within DVU0721 at 801.433 kb on - strand, within DVU0721 at 801.518 kb on + strand, within DVU0721 at 801.527 kb on + strand, within DVU0721
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/1-20 mM) remove 799,370 - -0.6 799,392 + DVU0720 0.10 -0.5 799,520 - DVU0720 0.20 -1.1 799,615 + DVU0720 0.27 -0.1 799,674 + DVU0720 0.32 +0.1 799,717 + DVU0720 0.35 -0.7 799,741 + DVU0720 0.37 -0.1 799,815 + DVU0720 0.43 -0.3 799,840 + DVU0720 0.45 -0.2 800,025 + DVU0720 0.59 +0.3 800,025 + DVU0720 0.59 -1.2 800,126 + DVU0720 0.67 -0.4 800,126 + DVU0720 0.67 -0.4 800,126 + DVU0720 0.67 +0.1 800,126 + DVU0720 0.67 -0.0 800,134 - DVU0720 0.68 -0.7 800,152 + DVU0720 0.69 -0.5 800,180 + DVU0720 0.71 -1.9 800,285 - DVU0720 0.79 +0.3 800,285 - DVU0720 0.79 -0.8 800,290 - DVU0720 0.80 -0.2 800,481 + +0.3 800,586 + +0.3 800,737 + -0.1 800,767 - -0.7 800,801 - +0.0 800,803 + -0.0 800,803 + -0.5 800,808 + -0.3 800,836 - -0.9 800,838 + +0.7 800,916 + +0.0 800,932 + +0.2 801,039 + DVU0721 0.13 +0.0 801,049 + DVU0721 0.13 +0.4 801,106 + DVU0721 0.15 -0.2 801,213 + DVU0721 0.19 +0.3 801,239 - DVU0721 0.20 +0.2 801,330 + DVU0721 0.23 -0.3 801,338 - DVU0721 0.23 +0.6 801,433 - DVU0721 0.27 -0.2 801,518 + DVU0721 0.30 -0.3 801,527 + DVU0721 0.30 +0.9
Or see this region's nucleotide sequence