Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_576 and Pf6N2E2_577 are separated by 642 nucleotides Pf6N2E2_577 and Pf6N2E2_578 are separated by 61 nucleotides Pf6N2E2_578 and Pf6N2E2_579 overlap by 4 nucleotides
Pf6N2E2_576 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 650,468 to 651,430
_576
Pf6N2E2_577 - Mobile element protein, at 652,073 to 653,641
_577
Pf6N2E2_578 - Mobile element protein, at 653,703 to 654,038
_578
Pf6N2E2_579 - FIG00962753: hypothetical protein, at 654,035 to 654,229
_579
Position (kb) 652
653
654 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 651.157 kb on + strand, within Pf6N2E2_576 at 651.158 kb on - strand, within Pf6N2E2_576 at 651.308 kb on + strand, within Pf6N2E2_576 at 651.375 kb on + strand at 651.376 kb on - strand at 651.376 kb on - strand at 651.401 kb on + strand at 651.401 kb on + strand at 651.401 kb on + strand at 651.402 kb on - strand at 651.429 kb on - strand at 651.461 kb on + strand at 651.461 kb on + strand at 651.461 kb on + strand at 651.462 kb on - strand at 651.462 kb on - strand at 651.476 kb on + strand at 651.476 kb on + strand at 651.476 kb on + strand at 651.477 kb on - strand at 651.477 kb on - strand at 651.511 kb on + strand at 651.512 kb on - strand at 651.528 kb on - strand at 651.564 kb on - strand at 651.564 kb on - strand at 651.601 kb on + strand at 651.604 kb on - strand at 651.604 kb on - strand at 651.645 kb on - strand at 651.645 kb on - strand at 651.645 kb on - strand at 651.708 kb on + strand at 651.708 kb on + strand at 651.708 kb on + strand at 651.708 kb on + strand at 651.711 kb on - strand at 651.711 kb on - strand at 651.782 kb on - strand at 651.824 kb on + strand at 651.840 kb on - strand at 651.840 kb on - strand at 651.840 kb on - strand at 651.840 kb on - strand at 651.844 kb on + strand at 651.844 kb on + strand at 651.848 kb on + strand at 651.849 kb on - strand at 651.849 kb on - strand at 651.866 kb on + strand at 651.875 kb on + strand at 651.876 kb on - strand at 651.876 kb on - strand at 651.936 kb on + strand at 651.936 kb on + strand at 651.937 kb on - strand at 651.946 kb on + strand at 651.946 kb on + strand at 651.947 kb on - strand at 651.985 kb on + strand at 651.985 kb on + strand at 651.986 kb on - strand at 651.986 kb on - strand at 652.025 kb on - strand at 652.025 kb on - strand at 652.039 kb on + strand at 652.040 kb on - strand at 652.040 kb on - strand at 652.155 kb on - strand at 652.155 kb on - strand at 652.159 kb on - strand at 652.304 kb on - strand, within Pf6N2E2_577 at 652.304 kb on - strand, within Pf6N2E2_577 at 652.304 kb on - strand, within Pf6N2E2_577 at 652.368 kb on + strand, within Pf6N2E2_577 at 652.368 kb on + strand, within Pf6N2E2_577 at 652.369 kb on - strand, within Pf6N2E2_577 at 652.436 kb on + strand, within Pf6N2E2_577 at 652.436 kb on + strand, within Pf6N2E2_577 at 652.436 kb on + strand, within Pf6N2E2_577 at 652.436 kb on + strand, within Pf6N2E2_577 at 652.437 kb on - strand, within Pf6N2E2_577 at 652.437 kb on - strand, within Pf6N2E2_577 at 652.437 kb on - strand, within Pf6N2E2_577 at 652.437 kb on - strand, within Pf6N2E2_577 at 652.437 kb on - strand, within Pf6N2E2_577 at 652.437 kb on - strand, within Pf6N2E2_577 at 652.437 kb on - strand, within Pf6N2E2_577 at 652.437 kb on - strand, within Pf6N2E2_577 at 652.437 kb on - strand, within Pf6N2E2_577 at 652.437 kb on - strand, within Pf6N2E2_577 at 652.441 kb on + strand, within Pf6N2E2_577 at 652.506 kb on - strand, within Pf6N2E2_577 at 652.506 kb on - strand, within Pf6N2E2_577 at 652.524 kb on + strand, within Pf6N2E2_577 at 652.525 kb on - strand, within Pf6N2E2_577 at 652.540 kb on - strand, within Pf6N2E2_577 at 652.540 kb on - strand, within Pf6N2E2_577 at 652.540 kb on - strand, within Pf6N2E2_577 at 652.657 kb on - strand, within Pf6N2E2_577 at 652.679 kb on + strand, within Pf6N2E2_577 at 652.679 kb on + strand, within Pf6N2E2_577 at 652.679 kb on + strand, within Pf6N2E2_577 at 652.680 kb on - strand, within Pf6N2E2_577 at 652.785 kb on + strand, within Pf6N2E2_577 at 652.786 kb on - strand, within Pf6N2E2_577 at 652.786 kb on - strand, within Pf6N2E2_577 at 652.797 kb on + strand, within Pf6N2E2_577 at 652.797 kb on + strand, within Pf6N2E2_577 at 652.797 kb on + strand, within Pf6N2E2_577 at 652.798 kb on - strand, within Pf6N2E2_577 at 652.798 kb on - strand, within Pf6N2E2_577 at 652.861 kb on + strand, within Pf6N2E2_577 at 653.046 kb on - strand, within Pf6N2E2_577 at 653.172 kb on + strand, within Pf6N2E2_577 at 653.172 kb on + strand, within Pf6N2E2_577 at 653.173 kb on - strand, within Pf6N2E2_577 at 653.173 kb on - strand, within Pf6N2E2_577 at 653.173 kb on - strand, within Pf6N2E2_577 at 653.259 kb on - strand, within Pf6N2E2_577 at 653.459 kb on + strand at 653.460 kb on - strand, within Pf6N2E2_577 at 653.573 kb on + strand at 653.574 kb on - strand at 653.588 kb on + strand at 653.611 kb on + strand at 653.920 kb on + strand, within Pf6N2E2_578 at 653.920 kb on + strand, within Pf6N2E2_578 at 653.920 kb on + strand, within Pf6N2E2_578 at 653.920 kb on + strand, within Pf6N2E2_578 at 653.920 kb on + strand, within Pf6N2E2_578 at 653.920 kb on + strand, within Pf6N2E2_578 at 653.921 kb on - strand, within Pf6N2E2_578 at 653.921 kb on - strand, within Pf6N2E2_578 at 654.053 kb on + strand at 654.054 kb on - strand at 654.178 kb on + strand, within Pf6N2E2_579 at 654.179 kb on - strand, within Pf6N2E2_579 at 654.381 kb on - strand at 654.388 kb on + strand at 654.388 kb on + strand at 654.447 kb on + strand at 654.468 kb on + strand at 654.469 kb on - strand at 654.469 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 651,157 + Pf6N2E2_576 0.72 +0.9 651,158 - Pf6N2E2_576 0.72 -0.7 651,308 + Pf6N2E2_576 0.87 -0.3 651,375 + -0.1 651,376 - +0.4 651,376 - +0.9 651,401 + +0.2 651,401 + +0.6 651,401 + -1.2 651,402 - -0.7 651,429 - +0.0 651,461 + -2.5 651,461 + +0.5 651,461 + -2.0 651,462 - -0.3 651,462 - -1.4 651,476 + +0.4 651,476 + +0.7 651,476 + -1.0 651,477 - +0.2 651,477 - +2.3 651,511 + +0.4 651,512 - -1.1 651,528 - -0.3 651,564 - +2.5 651,564 - +0.2 651,601 + +0.9 651,604 - -1.8 651,604 - +1.1 651,645 - -0.5 651,645 - -1.4 651,645 - +1.7 651,708 + -0.8 651,708 + +0.9 651,708 + +0.4 651,708 + -2.4 651,711 - +1.1 651,711 - -1.6 651,782 - -3.2 651,824 + +0.9 651,840 - +1.3 651,840 - -1.5 651,840 - +0.3 651,840 - +0.7 651,844 + +0.2 651,844 + -0.6 651,848 + +0.1 651,849 - -0.6 651,849 - -0.8 651,866 + -1.6 651,875 + +0.2 651,876 - -0.3 651,876 - +0.3 651,936 + +1.1 651,936 + -0.1 651,937 - +0.3 651,946 + +0.0 651,946 + -1.3 651,947 - -1.3 651,985 + -0.6 651,985 + +0.9 651,986 - -1.1 651,986 - -0.4 652,025 - +0.4 652,025 - -1.2 652,039 + -1.4 652,040 - -1.0 652,040 - +0.6 652,155 - -2.4 652,155 - -2.1 652,159 - +0.5 652,304 - Pf6N2E2_577 0.15 +0.2 652,304 - Pf6N2E2_577 0.15 +0.9 652,304 - Pf6N2E2_577 0.15 +0.6 652,368 + Pf6N2E2_577 0.19 +0.9 652,368 + Pf6N2E2_577 0.19 -1.1 652,369 - Pf6N2E2_577 0.19 -2.1 652,436 + Pf6N2E2_577 0.23 -0.1 652,436 + Pf6N2E2_577 0.23 +0.2 652,436 + Pf6N2E2_577 0.23 +0.3 652,436 + Pf6N2E2_577 0.23 +1.5 652,437 - Pf6N2E2_577 0.23 -1.1 652,437 - Pf6N2E2_577 0.23 -0.9 652,437 - Pf6N2E2_577 0.23 +0.1 652,437 - Pf6N2E2_577 0.23 -0.7 652,437 - Pf6N2E2_577 0.23 +0.1 652,437 - Pf6N2E2_577 0.23 -2.4 652,437 - Pf6N2E2_577 0.23 +1.7 652,437 - Pf6N2E2_577 0.23 -2.4 652,437 - Pf6N2E2_577 0.23 +0.4 652,437 - Pf6N2E2_577 0.23 -1.6 652,441 + Pf6N2E2_577 0.23 -1.1 652,506 - Pf6N2E2_577 0.28 -1.4 652,506 - Pf6N2E2_577 0.28 +1.3 652,524 + Pf6N2E2_577 0.29 -1.6 652,525 - Pf6N2E2_577 0.29 -0.6 652,540 - Pf6N2E2_577 0.30 -1.9 652,540 - Pf6N2E2_577 0.30 -0.3 652,540 - Pf6N2E2_577 0.30 -0.3 652,657 - Pf6N2E2_577 0.37 -0.5 652,679 + Pf6N2E2_577 0.39 -0.6 652,679 + Pf6N2E2_577 0.39 +0.7 652,679 + Pf6N2E2_577 0.39 -0.6 652,680 - Pf6N2E2_577 0.39 -2.2 652,785 + Pf6N2E2_577 0.45 +0.3 652,786 - Pf6N2E2_577 0.45 -0.1 652,786 - Pf6N2E2_577 0.45 -0.9 652,797 + Pf6N2E2_577 0.46 -0.5 652,797 + Pf6N2E2_577 0.46 +1.2 652,797 + Pf6N2E2_577 0.46 +0.9 652,798 - Pf6N2E2_577 0.46 +1.8 652,798 - Pf6N2E2_577 0.46 -1.1 652,861 + Pf6N2E2_577 0.50 -0.3 653,046 - Pf6N2E2_577 0.62 -1.4 653,172 + Pf6N2E2_577 0.70 -1.6 653,172 + Pf6N2E2_577 0.70 -0.9 653,173 - Pf6N2E2_577 0.70 +0.1 653,173 - Pf6N2E2_577 0.70 +0.2 653,173 - Pf6N2E2_577 0.70 +1.5 653,259 - Pf6N2E2_577 0.76 -0.8 653,459 + -0.1 653,460 - Pf6N2E2_577 0.88 +0.6 653,573 + +0.9 653,574 - -0.2 653,588 + +0.4 653,611 + +2.5 653,920 + Pf6N2E2_578 0.65 +0.3 653,920 + Pf6N2E2_578 0.65 +1.0 653,920 + Pf6N2E2_578 0.65 +0.4 653,920 + Pf6N2E2_578 0.65 +0.7 653,920 + Pf6N2E2_578 0.65 -2.6 653,920 + Pf6N2E2_578 0.65 +1.1 653,921 - Pf6N2E2_578 0.65 -1.1 653,921 - Pf6N2E2_578 0.65 +0.4 654,053 + -0.7 654,054 - +2.2 654,178 + Pf6N2E2_579 0.73 +0.8 654,179 - Pf6N2E2_579 0.74 +0.4 654,381 - +0.6 654,388 + -1.6 654,388 + +0.9 654,447 + -0.5 654,468 + +0.4 654,469 - -0.4 654,469 - -0.7
Or see this region's nucleotide sequence