Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3596 and Pf6N2E2_3597 overlap by 12 nucleotides Pf6N2E2_3597 and Pf6N2E2_3598 are separated by 69 nucleotides Pf6N2E2_3598 and Pf6N2E2_3599 are separated by 317 nucleotides
Pf6N2E2_3596 - Large protein containing transglutaminase-like domain, at 4,185,571 to 4,188,144
_3596
Pf6N2E2_3597 - hypothetical protein, at 4,188,133 to 4,188,249
_3597
Pf6N2E2_3598 - hypothetical protein, at 4,188,319 to 4,188,459
_3598
Pf6N2E2_3599 - FIG00958717: hypothetical protein, at 4,188,777 to 4,189,697
_3599
Position (kb)
4188
4189 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4187.243 kb on + strand, within Pf6N2E2_3596 at 4187.362 kb on - strand, within Pf6N2E2_3596 at 4187.362 kb on - strand, within Pf6N2E2_3596 at 4187.441 kb on + strand, within Pf6N2E2_3596 at 4187.441 kb on + strand, within Pf6N2E2_3596 at 4187.441 kb on + strand, within Pf6N2E2_3596 at 4187.441 kb on + strand, within Pf6N2E2_3596 at 4187.441 kb on + strand, within Pf6N2E2_3596 at 4187.442 kb on - strand, within Pf6N2E2_3596 at 4187.534 kb on + strand, within Pf6N2E2_3596 at 4187.535 kb on - strand, within Pf6N2E2_3596 at 4187.631 kb on + strand, within Pf6N2E2_3596 at 4187.632 kb on - strand, within Pf6N2E2_3596 at 4187.672 kb on + strand, within Pf6N2E2_3596 at 4187.672 kb on + strand, within Pf6N2E2_3596 at 4187.673 kb on - strand, within Pf6N2E2_3596 at 4187.673 kb on - strand, within Pf6N2E2_3596 at 4187.756 kb on + strand, within Pf6N2E2_3596 at 4187.757 kb on - strand, within Pf6N2E2_3596 at 4187.757 kb on - strand, within Pf6N2E2_3596 at 4187.796 kb on - strand, within Pf6N2E2_3596 at 4187.960 kb on + strand at 4187.960 kb on + strand at 4187.960 kb on + strand at 4187.961 kb on - strand at 4187.961 kb on - strand at 4187.961 kb on - strand at 4187.965 kb on - strand at 4187.965 kb on - strand at 4188.023 kb on + strand at 4188.023 kb on + strand at 4188.114 kb on + strand at 4188.193 kb on - strand, within Pf6N2E2_3597 at 4188.193 kb on - strand, within Pf6N2E2_3597 at 4188.193 kb on - strand, within Pf6N2E2_3597 at 4188.193 kb on - strand, within Pf6N2E2_3597 at 4188.193 kb on - strand, within Pf6N2E2_3597 at 4188.193 kb on - strand, within Pf6N2E2_3597 at 4188.227 kb on + strand, within Pf6N2E2_3597 at 4188.239 kb on + strand at 4188.239 kb on + strand at 4188.239 kb on + strand at 4188.239 kb on + strand at 4188.240 kb on - strand at 4188.240 kb on - strand at 4188.240 kb on - strand at 4188.240 kb on - strand at 4188.248 kb on - strand at 4188.290 kb on + strand at 4188.290 kb on + strand at 4188.290 kb on + strand at 4188.290 kb on + strand at 4188.290 kb on + strand at 4188.290 kb on + strand at 4188.290 kb on + strand at 4188.291 kb on - strand at 4188.291 kb on - strand at 4188.291 kb on - strand at 4188.291 kb on - strand at 4188.796 kb on + strand at 4188.797 kb on - strand at 4188.797 kb on - strand at 4188.797 kb on - strand at 4188.797 kb on - strand at 4188.797 kb on - strand at 4188.797 kb on - strand at 4188.928 kb on - strand, within Pf6N2E2_3599 at 4188.986 kb on + strand, within Pf6N2E2_3599 at 4188.987 kb on - strand, within Pf6N2E2_3599 at 4189.073 kb on + strand, within Pf6N2E2_3599 at 4189.162 kb on + strand, within Pf6N2E2_3599
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 4,187,243 + Pf6N2E2_3596 0.65 -0.8 4,187,362 - Pf6N2E2_3596 0.70 +1.0 4,187,362 - Pf6N2E2_3596 0.70 -3.0 4,187,441 + Pf6N2E2_3596 0.73 -0.4 4,187,441 + Pf6N2E2_3596 0.73 -1.2 4,187,441 + Pf6N2E2_3596 0.73 +0.9 4,187,441 + Pf6N2E2_3596 0.73 -0.5 4,187,441 + Pf6N2E2_3596 0.73 +0.2 4,187,442 - Pf6N2E2_3596 0.73 -0.5 4,187,534 + Pf6N2E2_3596 0.76 +0.1 4,187,535 - Pf6N2E2_3596 0.76 -0.4 4,187,631 + Pf6N2E2_3596 0.80 -1.2 4,187,632 - Pf6N2E2_3596 0.80 -0.4 4,187,672 + Pf6N2E2_3596 0.82 +1.9 4,187,672 + Pf6N2E2_3596 0.82 -0.1 4,187,673 - Pf6N2E2_3596 0.82 +0.4 4,187,673 - Pf6N2E2_3596 0.82 +0.6 4,187,756 + Pf6N2E2_3596 0.85 +0.5 4,187,757 - Pf6N2E2_3596 0.85 +1.1 4,187,757 - Pf6N2E2_3596 0.85 +0.8 4,187,796 - Pf6N2E2_3596 0.86 +0.6 4,187,960 + -0.7 4,187,960 + +0.6 4,187,960 + -0.8 4,187,961 - +0.6 4,187,961 - +1.0 4,187,961 - +1.6 4,187,965 - -0.7 4,187,965 - +0.5 4,188,023 + -0.6 4,188,023 + -0.1 4,188,114 + -1.6 4,188,193 - Pf6N2E2_3597 0.51 -1.5 4,188,193 - Pf6N2E2_3597 0.51 -1.1 4,188,193 - Pf6N2E2_3597 0.51 -3.3 4,188,193 - Pf6N2E2_3597 0.51 -0.4 4,188,193 - Pf6N2E2_3597 0.51 -2.8 4,188,193 - Pf6N2E2_3597 0.51 -0.8 4,188,227 + Pf6N2E2_3597 0.80 -0.7 4,188,239 + +0.9 4,188,239 + -0.1 4,188,239 + -2.4 4,188,239 + -0.0 4,188,240 - +1.3 4,188,240 - +1.6 4,188,240 - -2.7 4,188,240 - -1.8 4,188,248 - -1.2 4,188,290 + -0.4 4,188,290 + -0.5 4,188,290 + +0.7 4,188,290 + -0.5 4,188,290 + +0.1 4,188,290 + -1.8 4,188,290 + -0.7 4,188,291 - -1.3 4,188,291 - +0.4 4,188,291 - -0.4 4,188,291 - -0.7 4,188,796 + +0.3 4,188,797 - -0.7 4,188,797 - +1.5 4,188,797 - -0.1 4,188,797 - -0.7 4,188,797 - -0.4 4,188,797 - +0.2 4,188,928 - Pf6N2E2_3599 0.16 -0.6 4,188,986 + Pf6N2E2_3599 0.23 +0.2 4,188,987 - Pf6N2E2_3599 0.23 +1.5 4,189,073 + Pf6N2E2_3599 0.32 -0.8 4,189,162 + Pf6N2E2_3599 0.42 +1.0
Or see this region's nucleotide sequence