Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3597

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3596 and Pf6N2E2_3597 overlap by 12 nucleotidesPf6N2E2_3597 and Pf6N2E2_3598 are separated by 69 nucleotidesPf6N2E2_3598 and Pf6N2E2_3599 are separated by 317 nucleotides Pf6N2E2_3596 - Large protein containing transglutaminase-like domain, at 4,185,571 to 4,188,144 _3596 Pf6N2E2_3597 - hypothetical protein, at 4,188,133 to 4,188,249 _3597 Pf6N2E2_3598 - hypothetical protein, at 4,188,319 to 4,188,459 _3598 Pf6N2E2_3599 - FIG00958717: hypothetical protein, at 4,188,777 to 4,189,697 _3599 Position (kb) 4188 4189Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4187.243 kb on + strand, within Pf6N2E2_3596at 4187.362 kb on - strand, within Pf6N2E2_3596at 4187.362 kb on - strand, within Pf6N2E2_3596at 4187.441 kb on + strand, within Pf6N2E2_3596at 4187.441 kb on + strand, within Pf6N2E2_3596at 4187.441 kb on + strand, within Pf6N2E2_3596at 4187.441 kb on + strand, within Pf6N2E2_3596at 4187.441 kb on + strand, within Pf6N2E2_3596at 4187.442 kb on - strand, within Pf6N2E2_3596at 4187.534 kb on + strand, within Pf6N2E2_3596at 4187.535 kb on - strand, within Pf6N2E2_3596at 4187.631 kb on + strand, within Pf6N2E2_3596at 4187.632 kb on - strand, within Pf6N2E2_3596at 4187.672 kb on + strand, within Pf6N2E2_3596at 4187.672 kb on + strand, within Pf6N2E2_3596at 4187.673 kb on - strand, within Pf6N2E2_3596at 4187.673 kb on - strand, within Pf6N2E2_3596at 4187.756 kb on + strand, within Pf6N2E2_3596at 4187.757 kb on - strand, within Pf6N2E2_3596at 4187.757 kb on - strand, within Pf6N2E2_3596at 4187.796 kb on - strand, within Pf6N2E2_3596at 4187.960 kb on + strandat 4187.960 kb on + strandat 4187.960 kb on + strandat 4187.961 kb on - strandat 4187.961 kb on - strandat 4187.961 kb on - strandat 4187.965 kb on - strandat 4187.965 kb on - strandat 4188.023 kb on + strandat 4188.023 kb on + strandat 4188.114 kb on + strandat 4188.193 kb on - strand, within Pf6N2E2_3597at 4188.193 kb on - strand, within Pf6N2E2_3597at 4188.193 kb on - strand, within Pf6N2E2_3597at 4188.193 kb on - strand, within Pf6N2E2_3597at 4188.193 kb on - strand, within Pf6N2E2_3597at 4188.193 kb on - strand, within Pf6N2E2_3597at 4188.227 kb on + strand, within Pf6N2E2_3597at 4188.239 kb on + strandat 4188.239 kb on + strandat 4188.239 kb on + strandat 4188.239 kb on + strandat 4188.240 kb on - strandat 4188.240 kb on - strandat 4188.240 kb on - strandat 4188.240 kb on - strandat 4188.248 kb on - strandat 4188.290 kb on + strandat 4188.290 kb on + strandat 4188.290 kb on + strandat 4188.290 kb on + strandat 4188.290 kb on + strandat 4188.290 kb on + strandat 4188.290 kb on + strandat 4188.291 kb on - strandat 4188.291 kb on - strandat 4188.291 kb on - strandat 4188.291 kb on - strandat 4188.796 kb on + strandat 4188.797 kb on - strandat 4188.797 kb on - strandat 4188.797 kb on - strandat 4188.797 kb on - strandat 4188.797 kb on - strandat 4188.797 kb on - strandat 4188.928 kb on - strand, within Pf6N2E2_3599at 4188.986 kb on + strand, within Pf6N2E2_3599at 4188.987 kb on - strand, within Pf6N2E2_3599at 4189.073 kb on + strand, within Pf6N2E2_3599at 4189.162 kb on + strand, within Pf6N2E2_3599

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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4,187,243 + Pf6N2E2_3596 0.65 -0.8
4,187,362 - Pf6N2E2_3596 0.70 +1.0
4,187,362 - Pf6N2E2_3596 0.70 -3.0
4,187,441 + Pf6N2E2_3596 0.73 -0.4
4,187,441 + Pf6N2E2_3596 0.73 -1.2
4,187,441 + Pf6N2E2_3596 0.73 +0.9
4,187,441 + Pf6N2E2_3596 0.73 -0.5
4,187,441 + Pf6N2E2_3596 0.73 +0.2
4,187,442 - Pf6N2E2_3596 0.73 -0.5
4,187,534 + Pf6N2E2_3596 0.76 +0.1
4,187,535 - Pf6N2E2_3596 0.76 -0.4
4,187,631 + Pf6N2E2_3596 0.80 -1.2
4,187,632 - Pf6N2E2_3596 0.80 -0.4
4,187,672 + Pf6N2E2_3596 0.82 +1.9
4,187,672 + Pf6N2E2_3596 0.82 -0.1
4,187,673 - Pf6N2E2_3596 0.82 +0.4
4,187,673 - Pf6N2E2_3596 0.82 +0.6
4,187,756 + Pf6N2E2_3596 0.85 +0.5
4,187,757 - Pf6N2E2_3596 0.85 +1.1
4,187,757 - Pf6N2E2_3596 0.85 +0.8
4,187,796 - Pf6N2E2_3596 0.86 +0.6
4,187,960 + -0.7
4,187,960 + +0.6
4,187,960 + -0.8
4,187,961 - +0.6
4,187,961 - +1.0
4,187,961 - +1.6
4,187,965 - -0.7
4,187,965 - +0.5
4,188,023 + -0.6
4,188,023 + -0.1
4,188,114 + -1.6
4,188,193 - Pf6N2E2_3597 0.51 -1.5
4,188,193 - Pf6N2E2_3597 0.51 -1.1
4,188,193 - Pf6N2E2_3597 0.51 -3.3
4,188,193 - Pf6N2E2_3597 0.51 -0.4
4,188,193 - Pf6N2E2_3597 0.51 -2.8
4,188,193 - Pf6N2E2_3597 0.51 -0.8
4,188,227 + Pf6N2E2_3597 0.80 -0.7
4,188,239 + +0.9
4,188,239 + -0.1
4,188,239 + -2.4
4,188,239 + -0.0
4,188,240 - +1.3
4,188,240 - +1.6
4,188,240 - -2.7
4,188,240 - -1.8
4,188,248 - -1.2
4,188,290 + -0.4
4,188,290 + -0.5
4,188,290 + +0.7
4,188,290 + -0.5
4,188,290 + +0.1
4,188,290 + -1.8
4,188,290 + -0.7
4,188,291 - -1.3
4,188,291 - +0.4
4,188,291 - -0.4
4,188,291 - -0.7
4,188,796 + +0.3
4,188,797 - -0.7
4,188,797 - +1.5
4,188,797 - -0.1
4,188,797 - -0.7
4,188,797 - -0.4
4,188,797 - +0.2
4,188,928 - Pf6N2E2_3599 0.16 -0.6
4,188,986 + Pf6N2E2_3599 0.23 +0.2
4,188,987 - Pf6N2E2_3599 0.23 +1.5
4,189,073 + Pf6N2E2_3599 0.32 -0.8
4,189,162 + Pf6N2E2_3599 0.42 +1.0

Or see this region's nucleotide sequence