Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3001

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3000 and Pf6N2E2_3001 are separated by 11 nucleotidesPf6N2E2_3001 and Pf6N2E2_3002 overlap by 13 nucleotides Pf6N2E2_3000 - Prophage tail fiber protein, at 3,490,214 to 3,491,377 _3000 Pf6N2E2_3001 - FIG121501: Prophage tail protein, at 3,491,389 to 3,491,988 _3001 Pf6N2E2_3002 - Phage FluMu protein gp47, at 3,491,976 to 3,493,016 _3002 Position (kb) 3491 3492Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3490.429 kb on + strand, within Pf6N2E2_3000at 3490.438 kb on + strand, within Pf6N2E2_3000at 3490.477 kb on + strand, within Pf6N2E2_3000at 3490.477 kb on + strand, within Pf6N2E2_3000at 3490.477 kb on + strand, within Pf6N2E2_3000at 3490.477 kb on + strand, within Pf6N2E2_3000at 3490.477 kb on + strand, within Pf6N2E2_3000at 3490.477 kb on + strand, within Pf6N2E2_3000at 3490.477 kb on + strandat 3490.477 kb on + strand, within Pf6N2E2_3000at 3490.477 kb on + strand, within Pf6N2E2_3000at 3490.477 kb on + strand, within Pf6N2E2_3000at 3490.477 kb on + strand, within Pf6N2E2_3000at 3490.477 kb on + strand, within Pf6N2E2_3000at 3490.477 kb on + strand, within Pf6N2E2_3000at 3490.477 kb on + strand, within Pf6N2E2_3000at 3490.478 kb on - strand, within Pf6N2E2_3000at 3490.478 kb on - strand, within Pf6N2E2_3000at 3490.478 kb on - strand, within Pf6N2E2_3000at 3490.478 kb on - strand, within Pf6N2E2_3000at 3490.478 kb on - strand, within Pf6N2E2_3000at 3490.478 kb on - strand, within Pf6N2E2_3000at 3490.478 kb on - strand, within Pf6N2E2_3000at 3490.478 kb on - strand, within Pf6N2E2_3000at 3490.478 kb on - strand, within Pf6N2E2_3000at 3490.478 kb on - strand, within Pf6N2E2_3000at 3490.478 kb on - strand, within Pf6N2E2_3000at 3490.478 kb on - strand, within Pf6N2E2_3000at 3490.478 kb on - strand, within Pf6N2E2_3000at 3490.478 kb on - strand, within Pf6N2E2_3000at 3490.479 kb on + strand, within Pf6N2E2_3000at 3490.522 kb on + strand, within Pf6N2E2_3000at 3490.522 kb on + strand, within Pf6N2E2_3000at 3490.545 kb on + strand, within Pf6N2E2_3000at 3490.545 kb on + strand, within Pf6N2E2_3000at 3490.545 kb on + strand, within Pf6N2E2_3000at 3490.545 kb on + strand, within Pf6N2E2_3000at 3490.545 kb on + strand, within Pf6N2E2_3000at 3490.545 kb on + strand, within Pf6N2E2_3000at 3490.545 kb on + strand, within Pf6N2E2_3000at 3490.545 kb on + strand, within Pf6N2E2_3000at 3490.545 kb on + strand, within Pf6N2E2_3000at 3490.546 kb on - strand, within Pf6N2E2_3000at 3490.546 kb on - strand, within Pf6N2E2_3000at 3490.546 kb on - strand, within Pf6N2E2_3000at 3490.551 kb on + strand, within Pf6N2E2_3000at 3490.551 kb on + strand, within Pf6N2E2_3000at 3490.551 kb on + strand, within Pf6N2E2_3000at 3490.551 kb on + strand, within Pf6N2E2_3000at 3490.551 kb on + strand, within Pf6N2E2_3000at 3490.551 kb on + strand, within Pf6N2E2_3000at 3490.551 kb on + strand, within Pf6N2E2_3000at 3490.551 kb on + strand, within Pf6N2E2_3000at 3490.551 kb on + strand, within Pf6N2E2_3000at 3490.552 kb on - strand, within Pf6N2E2_3000at 3490.552 kb on - strand, within Pf6N2E2_3000at 3490.552 kb on - strand, within Pf6N2E2_3000at 3490.552 kb on - strand, within Pf6N2E2_3000at 3490.668 kb on + strand, within Pf6N2E2_3000at 3490.669 kb on - strand, within Pf6N2E2_3000at 3490.669 kb on - strand, within Pf6N2E2_3000at 3490.688 kb on + strand, within Pf6N2E2_3000at 3490.688 kb on + strand, within Pf6N2E2_3000at 3490.689 kb on - strand, within Pf6N2E2_3000at 3490.722 kb on + strand, within Pf6N2E2_3000at 3490.722 kb on + strand, within Pf6N2E2_3000at 3490.722 kb on + strand, within Pf6N2E2_3000at 3490.723 kb on - strand, within Pf6N2E2_3000at 3490.723 kb on - strand, within Pf6N2E2_3000at 3490.723 kb on - strand, within Pf6N2E2_3000at 3490.860 kb on + strand, within Pf6N2E2_3000at 3490.860 kb on + strand, within Pf6N2E2_3000at 3490.861 kb on - strand, within Pf6N2E2_3000at 3490.861 kb on - strand, within Pf6N2E2_3000at 3490.879 kb on + strand, within Pf6N2E2_3000at 3490.879 kb on + strand, within Pf6N2E2_3000at 3490.880 kb on - strand, within Pf6N2E2_3000at 3490.881 kb on + strand, within Pf6N2E2_3000at 3490.881 kb on + strand, within Pf6N2E2_3000at 3490.881 kb on + strand, within Pf6N2E2_3000at 3490.881 kb on + strand, within Pf6N2E2_3000at 3490.882 kb on - strand, within Pf6N2E2_3000at 3490.882 kb on - strand, within Pf6N2E2_3000at 3490.882 kb on - strand, within Pf6N2E2_3000at 3490.882 kb on - strand, within Pf6N2E2_3000at 3490.882 kb on - strand, within Pf6N2E2_3000at 3490.882 kb on - strand, within Pf6N2E2_3000at 3490.882 kb on - strand, within Pf6N2E2_3000at 3490.923 kb on + strand, within Pf6N2E2_3000at 3490.924 kb on - strand, within Pf6N2E2_3000at 3490.924 kb on - strand, within Pf6N2E2_3000at 3490.971 kb on + strand, within Pf6N2E2_3000at 3490.971 kb on + strand, within Pf6N2E2_3000at 3490.971 kb on + strand, within Pf6N2E2_3000at 3490.972 kb on - strand, within Pf6N2E2_3000at 3490.976 kb on - strand, within Pf6N2E2_3000at 3490.976 kb on - strand, within Pf6N2E2_3000at 3491.000 kb on + strand, within Pf6N2E2_3000at 3491.001 kb on - strand, within Pf6N2E2_3000at 3491.001 kb on - strand, within Pf6N2E2_3000at 3491.001 kb on - strand, within Pf6N2E2_3000at 3491.001 kb on - strand, within Pf6N2E2_3000at 3491.001 kb on - strand, within Pf6N2E2_3000at 3491.001 kb on - strand, within Pf6N2E2_3000at 3491.001 kb on - strand, within Pf6N2E2_3000at 3491.025 kb on + strand, within Pf6N2E2_3000at 3491.025 kb on + strand, within Pf6N2E2_3000at 3491.025 kb on + strand, within Pf6N2E2_3000at 3491.025 kb on + strand, within Pf6N2E2_3000at 3491.026 kb on - strand, within Pf6N2E2_3000at 3491.026 kb on - strand, within Pf6N2E2_3000at 3491.026 kb on - strand, within Pf6N2E2_3000at 3491.026 kb on - strand, within Pf6N2E2_3000at 3491.026 kb on - strand, within Pf6N2E2_3000at 3491.026 kb on - strand, within Pf6N2E2_3000at 3491.384 kb on - strandat 3491.397 kb on - strandat 3491.397 kb on - strandat 3491.397 kb on - strandat 3491.397 kb on - strandat 3491.397 kb on - strandat 3491.397 kb on - strandat 3491.416 kb on - strandat 3491.666 kb on + strand, within Pf6N2E2_3001at 3491.666 kb on + strand, within Pf6N2E2_3001at 3491.666 kb on + strand, within Pf6N2E2_3001at 3491.667 kb on - strand, within Pf6N2E2_3001at 3491.667 kb on - strand, within Pf6N2E2_3001at 3491.669 kb on + strand, within Pf6N2E2_3001at 3491.669 kb on + strand, within Pf6N2E2_3001at 3491.669 kb on + strand, within Pf6N2E2_3001at 3491.669 kb on + strand, within Pf6N2E2_3001at 3491.669 kb on + strand, within Pf6N2E2_3001at 3491.669 kb on + strand, within Pf6N2E2_3001at 3491.670 kb on - strand, within Pf6N2E2_3001at 3491.670 kb on - strand, within Pf6N2E2_3001at 3491.732 kb on + strand, within Pf6N2E2_3001at 3491.732 kb on + strand, within Pf6N2E2_3001at 3491.733 kb on - strand, within Pf6N2E2_3001at 3491.804 kb on - strand, within Pf6N2E2_3001at 3491.804 kb on - strand, within Pf6N2E2_3001at 3491.804 kb on - strand, within Pf6N2E2_3001at 3491.961 kb on - strandat 3491.961 kb on - strandat 3491.977 kb on + strandat 3491.978 kb on - strandat 3491.978 kb on - strandat 3492.280 kb on + strand, within Pf6N2E2_3002at 3492.281 kb on - strand, within Pf6N2E2_3002at 3492.281 kb on - strand, within Pf6N2E2_3002at 3492.373 kb on + strand, within Pf6N2E2_3002at 3492.430 kb on + strand, within Pf6N2E2_3002at 3492.431 kb on - strand, within Pf6N2E2_3002at 3492.552 kb on - strand, within Pf6N2E2_3002at 3492.552 kb on - strand, within Pf6N2E2_3002at 3492.666 kb on - strand, within Pf6N2E2_3002at 3492.886 kb on + strand, within Pf6N2E2_3002at 3492.886 kb on + strand, within Pf6N2E2_3002at 3492.886 kb on + strand, within Pf6N2E2_3002at 3492.886 kb on + strand, within Pf6N2E2_3002at 3492.886 kb on + strand, within Pf6N2E2_3002at 3492.886 kb on + strand, within Pf6N2E2_3002at 3492.886 kb on + strand, within Pf6N2E2_3002at 3492.887 kb on - strand, within Pf6N2E2_3002at 3492.887 kb on - strand, within Pf6N2E2_3002at 3492.887 kb on - strand, within Pf6N2E2_3002at 3492.887 kb on - strand, within Pf6N2E2_3002at 3492.887 kb on - strand, within Pf6N2E2_3002

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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3,490,429 + Pf6N2E2_3000 0.18 +0.4
3,490,438 + Pf6N2E2_3000 0.19 +0.4
3,490,477 + Pf6N2E2_3000 0.23 -0.2
3,490,477 + Pf6N2E2_3000 0.23 +0.4
3,490,477 + Pf6N2E2_3000 0.23 -0.0
3,490,477 + Pf6N2E2_3000 0.23 +0.5
3,490,477 + Pf6N2E2_3000 0.23 -0.1
3,490,477 + Pf6N2E2_3000 0.23 -1.0
3,490,477 + +2.6
3,490,477 + Pf6N2E2_3000 0.23 +1.1
3,490,477 + Pf6N2E2_3000 0.23 +1.2
3,490,477 + Pf6N2E2_3000 0.23 +0.4
3,490,477 + Pf6N2E2_3000 0.23 -0.0
3,490,477 + Pf6N2E2_3000 0.23 +0.7
3,490,477 + Pf6N2E2_3000 0.23 +0.3
3,490,477 + Pf6N2E2_3000 0.23 +0.1
3,490,478 - Pf6N2E2_3000 0.23 +1.1
3,490,478 - Pf6N2E2_3000 0.23 +0.3
3,490,478 - Pf6N2E2_3000 0.23 +0.3
3,490,478 - Pf6N2E2_3000 0.23 +0.8
3,490,478 - Pf6N2E2_3000 0.23 -0.2
3,490,478 - Pf6N2E2_3000 0.23 +0.6
3,490,478 - Pf6N2E2_3000 0.23 -0.5
3,490,478 - Pf6N2E2_3000 0.23 -2.8
3,490,478 - Pf6N2E2_3000 0.23 -0.3
3,490,478 - Pf6N2E2_3000 0.23 -0.4
3,490,478 - Pf6N2E2_3000 0.23 -1.9
3,490,478 - Pf6N2E2_3000 0.23 +1.6
3,490,478 - Pf6N2E2_3000 0.23 +1.6
3,490,478 - Pf6N2E2_3000 0.23 -1.2
3,490,479 + Pf6N2E2_3000 0.23 -1.1
3,490,522 + Pf6N2E2_3000 0.26 -2.9
3,490,522 + Pf6N2E2_3000 0.26 +0.6
3,490,545 + Pf6N2E2_3000 0.28 +1.0
3,490,545 + Pf6N2E2_3000 0.28 -0.5
3,490,545 + Pf6N2E2_3000 0.28 -0.3
3,490,545 + Pf6N2E2_3000 0.28 -1.4
3,490,545 + Pf6N2E2_3000 0.28 -0.3
3,490,545 + Pf6N2E2_3000 0.28 +0.2
3,490,545 + Pf6N2E2_3000 0.28 -0.9
3,490,545 + Pf6N2E2_3000 0.28 +1.8
3,490,545 + Pf6N2E2_3000 0.28 -1.1
3,490,546 - Pf6N2E2_3000 0.29 -1.0
3,490,546 - Pf6N2E2_3000 0.29 +0.5
3,490,546 - Pf6N2E2_3000 0.29 +1.2
3,490,551 + Pf6N2E2_3000 0.29 -2.2
3,490,551 + Pf6N2E2_3000 0.29 -1.0
3,490,551 + Pf6N2E2_3000 0.29 -0.3
3,490,551 + Pf6N2E2_3000 0.29 -1.4
3,490,551 + Pf6N2E2_3000 0.29 +0.8
3,490,551 + Pf6N2E2_3000 0.29 +0.5
3,490,551 + Pf6N2E2_3000 0.29 +0.4
3,490,551 + Pf6N2E2_3000 0.29 +0.8
3,490,551 + Pf6N2E2_3000 0.29 +1.0
3,490,552 - Pf6N2E2_3000 0.29 -0.0
3,490,552 - Pf6N2E2_3000 0.29 +2.7
3,490,552 - Pf6N2E2_3000 0.29 -0.2
3,490,552 - Pf6N2E2_3000 0.29 -0.1
3,490,668 + Pf6N2E2_3000 0.39 -0.2
3,490,669 - Pf6N2E2_3000 0.39 +1.0
3,490,669 - Pf6N2E2_3000 0.39 -0.3
3,490,688 + Pf6N2E2_3000 0.41 -2.6
3,490,688 + Pf6N2E2_3000 0.41 -1.0
3,490,689 - Pf6N2E2_3000 0.41 -0.0
3,490,722 + Pf6N2E2_3000 0.44 -1.5
3,490,722 + Pf6N2E2_3000 0.44 -0.5
3,490,722 + Pf6N2E2_3000 0.44 +1.6
3,490,723 - Pf6N2E2_3000 0.44 -0.7
3,490,723 - Pf6N2E2_3000 0.44 -0.2
3,490,723 - Pf6N2E2_3000 0.44 +0.6
3,490,860 + Pf6N2E2_3000 0.55 +0.2
3,490,860 + Pf6N2E2_3000 0.55 +0.1
3,490,861 - Pf6N2E2_3000 0.56 -2.1
3,490,861 - Pf6N2E2_3000 0.56 +0.2
3,490,879 + Pf6N2E2_3000 0.57 +0.8
3,490,879 + Pf6N2E2_3000 0.57 -0.6
3,490,880 - Pf6N2E2_3000 0.57 -2.2
3,490,881 + Pf6N2E2_3000 0.57 -0.0
3,490,881 + Pf6N2E2_3000 0.57 +1.8
3,490,881 + Pf6N2E2_3000 0.57 -0.7
3,490,881 + Pf6N2E2_3000 0.57 -0.1
3,490,882 - Pf6N2E2_3000 0.57 +0.4
3,490,882 - Pf6N2E2_3000 0.57 +2.5
3,490,882 - Pf6N2E2_3000 0.57 +1.0
3,490,882 - Pf6N2E2_3000 0.57 +1.2
3,490,882 - Pf6N2E2_3000 0.57 +0.1
3,490,882 - Pf6N2E2_3000 0.57 +1.0
3,490,882 - Pf6N2E2_3000 0.57 -1.3
3,490,923 + Pf6N2E2_3000 0.61 +0.9
3,490,924 - Pf6N2E2_3000 0.61 +1.8
3,490,924 - Pf6N2E2_3000 0.61 -0.5
3,490,971 + Pf6N2E2_3000 0.65 -0.0
3,490,971 + Pf6N2E2_3000 0.65 +2.6
3,490,971 + Pf6N2E2_3000 0.65 +0.4
3,490,972 - Pf6N2E2_3000 0.65 -0.2
3,490,976 - Pf6N2E2_3000 0.65 +0.2
3,490,976 - Pf6N2E2_3000 0.65 -1.5
3,491,000 + Pf6N2E2_3000 0.68 -1.6
3,491,001 - Pf6N2E2_3000 0.68 -1.4
3,491,001 - Pf6N2E2_3000 0.68 +0.8
3,491,001 - Pf6N2E2_3000 0.68 -1.2
3,491,001 - Pf6N2E2_3000 0.68 +0.1
3,491,001 - Pf6N2E2_3000 0.68 +0.8
3,491,001 - Pf6N2E2_3000 0.68 +1.0
3,491,001 - Pf6N2E2_3000 0.68 +0.4
3,491,025 + Pf6N2E2_3000 0.70 +1.7
3,491,025 + Pf6N2E2_3000 0.70 +0.8
3,491,025 + Pf6N2E2_3000 0.70 -0.5
3,491,025 + Pf6N2E2_3000 0.70 +2.2
3,491,026 - Pf6N2E2_3000 0.70 +0.9
3,491,026 - Pf6N2E2_3000 0.70 -0.0
3,491,026 - Pf6N2E2_3000 0.70 -1.0
3,491,026 - Pf6N2E2_3000 0.70 -1.9
3,491,026 - Pf6N2E2_3000 0.70 +0.7
3,491,026 - Pf6N2E2_3000 0.70 -0.1
3,491,384 - -0.8
3,491,397 - -0.1
3,491,397 - +0.3
3,491,397 - +2.1
3,491,397 - -2.3
3,491,397 - +0.7
3,491,397 - +1.5
3,491,416 - +1.1
3,491,666 + Pf6N2E2_3001 0.46 +0.6
3,491,666 + Pf6N2E2_3001 0.46 -0.3
3,491,666 + Pf6N2E2_3001 0.46 -0.0
3,491,667 - Pf6N2E2_3001 0.46 +0.1
3,491,667 - Pf6N2E2_3001 0.46 +0.2
3,491,669 + Pf6N2E2_3001 0.47 +0.2
3,491,669 + Pf6N2E2_3001 0.47 +0.9
3,491,669 + Pf6N2E2_3001 0.47 +1.2
3,491,669 + Pf6N2E2_3001 0.47 +0.8
3,491,669 + Pf6N2E2_3001 0.47 +1.4
3,491,669 + Pf6N2E2_3001 0.47 +1.1
3,491,670 - Pf6N2E2_3001 0.47 +2.2
3,491,670 - Pf6N2E2_3001 0.47 -0.3
3,491,732 + Pf6N2E2_3001 0.57 +0.7
3,491,732 + Pf6N2E2_3001 0.57 +0.6
3,491,733 - Pf6N2E2_3001 0.57 +0.8
3,491,804 - Pf6N2E2_3001 0.69 -2.3
3,491,804 - Pf6N2E2_3001 0.69 -2.1
3,491,804 - Pf6N2E2_3001 0.69 +0.7
3,491,961 - +2.0
3,491,961 - -0.6
3,491,977 + -0.2
3,491,978 - -0.6
3,491,978 - +0.2
3,492,280 + Pf6N2E2_3002 0.29 +1.3
3,492,281 - Pf6N2E2_3002 0.29 +0.5
3,492,281 - Pf6N2E2_3002 0.29 +0.3
3,492,373 + Pf6N2E2_3002 0.38 -1.5
3,492,430 + Pf6N2E2_3002 0.44 +0.4
3,492,431 - Pf6N2E2_3002 0.44 +0.2
3,492,552 - Pf6N2E2_3002 0.55 -1.1
3,492,552 - Pf6N2E2_3002 0.55 -2.1
3,492,666 - Pf6N2E2_3002 0.66 -0.2
3,492,886 + Pf6N2E2_3002 0.87 +1.9
3,492,886 + Pf6N2E2_3002 0.87 +0.9
3,492,886 + Pf6N2E2_3002 0.87 +0.5
3,492,886 + Pf6N2E2_3002 0.87 -0.6
3,492,886 + Pf6N2E2_3002 0.87 +0.6
3,492,886 + Pf6N2E2_3002 0.87 -0.5
3,492,886 + Pf6N2E2_3002 0.87 +0.7
3,492,887 - Pf6N2E2_3002 0.88 +1.0
3,492,887 - Pf6N2E2_3002 0.88 +2.2
3,492,887 - Pf6N2E2_3002 0.88 +0.4
3,492,887 - Pf6N2E2_3002 0.88 +0.6
3,492,887 - Pf6N2E2_3002 0.88 +2.2

Or see this region's nucleotide sequence