Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2121

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2120 and Pf6N2E2_2121 are separated by 36 nucleotides Pf6N2E2_2120 - Alpha-amylase (EC 3.2.1.1), at 2,521,164 to 2,523,161 _2120 Pf6N2E2_2121 - hypothetical protein, at 2,523,198 to 2,523,419 _2121 Position (kb) 2523 2524Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2522.285 kb on + strand, within Pf6N2E2_2120at 2522.286 kb on - strand, within Pf6N2E2_2120at 2522.321 kb on - strand, within Pf6N2E2_2120at 2522.410 kb on + strand, within Pf6N2E2_2120at 2522.410 kb on + strand, within Pf6N2E2_2120at 2522.411 kb on - strand, within Pf6N2E2_2120at 2522.411 kb on - strand, within Pf6N2E2_2120at 2522.518 kb on + strand, within Pf6N2E2_2120at 2522.519 kb on - strand, within Pf6N2E2_2120at 2522.584 kb on + strand, within Pf6N2E2_2120at 2522.585 kb on - strand, within Pf6N2E2_2120at 2522.585 kb on - strand, within Pf6N2E2_2120at 2522.854 kb on + strand, within Pf6N2E2_2120at 2522.854 kb on + strand, within Pf6N2E2_2120at 2522.854 kb on + strand, within Pf6N2E2_2120at 2522.854 kb on + strand, within Pf6N2E2_2120at 2522.854 kb on + strand, within Pf6N2E2_2120at 2522.854 kb on + strand, within Pf6N2E2_2120at 2522.854 kb on + strand, within Pf6N2E2_2120at 2522.854 kb on + strand, within Pf6N2E2_2120at 2522.855 kb on - strand, within Pf6N2E2_2120at 2522.855 kb on - strand, within Pf6N2E2_2120at 2522.855 kb on - strand, within Pf6N2E2_2120at 2523.086 kb on + strandat 2523.130 kb on + strandat 2523.131 kb on - strandat 2523.131 kb on - strandat 2523.131 kb on - strandat 2523.262 kb on + strand, within Pf6N2E2_2121at 2523.331 kb on + strand, within Pf6N2E2_2121at 2523.332 kb on - strand, within Pf6N2E2_2121at 2523.378 kb on + strand, within Pf6N2E2_2121at 2523.456 kb on + strandat 2523.456 kb on + strandat 2523.546 kb on + strandat 2523.546 kb on + strandat 2523.546 kb on + strandat 2523.546 kb on + strandat 2523.546 kb on + strandat 2523.546 kb on + strandat 2523.547 kb on - strandat 2523.547 kb on - strandat 2523.633 kb on - strandat 2523.686 kb on + strandat 2523.697 kb on - strandat 2523.781 kb on + strandat 2524.016 kb on + strandat 2524.016 kb on + strandat 2524.016 kb on + strandat 2524.018 kb on + strandat 2524.018 kb on + strandat 2524.093 kb on + strandat 2524.093 kb on + strandat 2524.093 kb on + strandat 2524.093 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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2,522,285 + Pf6N2E2_2120 0.56 +0.1
2,522,286 - Pf6N2E2_2120 0.56 -2.1
2,522,321 - Pf6N2E2_2120 0.58 -0.1
2,522,410 + Pf6N2E2_2120 0.62 +0.5
2,522,410 + Pf6N2E2_2120 0.62 +0.1
2,522,411 - Pf6N2E2_2120 0.62 -0.6
2,522,411 - Pf6N2E2_2120 0.62 +3.0
2,522,518 + Pf6N2E2_2120 0.68 +0.8
2,522,519 - Pf6N2E2_2120 0.68 -0.6
2,522,584 + Pf6N2E2_2120 0.71 -1.1
2,522,585 - Pf6N2E2_2120 0.71 +0.5
2,522,585 - Pf6N2E2_2120 0.71 +0.4
2,522,854 + Pf6N2E2_2120 0.85 -2.7
2,522,854 + Pf6N2E2_2120 0.85 +0.5
2,522,854 + Pf6N2E2_2120 0.85 -0.7
2,522,854 + Pf6N2E2_2120 0.85 +1.3
2,522,854 + Pf6N2E2_2120 0.85 +1.4
2,522,854 + Pf6N2E2_2120 0.85 +0.2
2,522,854 + Pf6N2E2_2120 0.85 +1.1
2,522,854 + Pf6N2E2_2120 0.85 -1.4
2,522,855 - Pf6N2E2_2120 0.85 +0.8
2,522,855 - Pf6N2E2_2120 0.85 +0.9
2,522,855 - Pf6N2E2_2120 0.85 +1.5
2,523,086 + +2.3
2,523,130 + -3.4
2,523,131 - +1.1
2,523,131 - -1.1
2,523,131 - -0.9
2,523,262 + Pf6N2E2_2121 0.29 -3.0
2,523,331 + Pf6N2E2_2121 0.60 -1.7
2,523,332 - Pf6N2E2_2121 0.60 -1.1
2,523,378 + Pf6N2E2_2121 0.81 -0.1
2,523,456 + -0.5
2,523,456 + -0.7
2,523,546 + -1.2
2,523,546 + +0.1
2,523,546 + +0.6
2,523,546 + +0.2
2,523,546 + +0.4
2,523,546 + +0.6
2,523,547 - -0.3
2,523,547 - +0.3
2,523,633 - -2.5
2,523,686 + -0.0
2,523,697 - -0.1
2,523,781 + -0.1
2,524,016 + +0.2
2,524,016 + -3.1
2,524,016 + +1.2
2,524,018 + +1.0
2,524,018 + +1.3
2,524,093 + -0.4
2,524,093 + -1.7
2,524,093 + +1.6
2,524,093 + +2.6

Or see this region's nucleotide sequence