Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_16

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_15 and Pf6N2E2_16 are separated by 202 nucleotides Pf6N2E2_15 - Pyoverdine biosynthesis related protein PvdP, at 44,782 to 46,380 _15 Pf6N2E2_16 - hypothetical protein, at 46,583 to 46,909 _16 Position (kb) 46 47Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 45.736 kb on + strand, within Pf6N2E2_15at 45.775 kb on + strand, within Pf6N2E2_15at 45.776 kb on - strand, within Pf6N2E2_15at 45.776 kb on - strand, within Pf6N2E2_15at 45.979 kb on + strand, within Pf6N2E2_15at 46.139 kb on + strand, within Pf6N2E2_15at 46.140 kb on - strand, within Pf6N2E2_15at 46.285 kb on - strandat 46.348 kb on + strandat 46.401 kb on - strandat 46.831 kb on - strand, within Pf6N2E2_16at 46.914 kb on + strandat 46.921 kb on + strandat 46.921 kb on + strandat 46.921 kb on + strandat 46.922 kb on - strandat 46.922 kb on - strandat 46.922 kb on - strandat 46.922 kb on - strandat 46.922 kb on - strandat 46.924 kb on + strandat 46.924 kb on + strandat 46.924 kb on + strandat 46.927 kb on + strandat 46.927 kb on + strandat 46.928 kb on - strandat 46.928 kb on - strandat 47.001 kb on + strandat 47.002 kb on - strandat 47.070 kb on + strandat 47.070 kb on + strandat 47.070 kb on + strandat 47.070 kb on + strandat 47.094 kb on + strandat 47.094 kb on + strandat 47.094 kb on + strandat 47.145 kb on + strandat 47.146 kb on - strandat 47.193 kb on + strandat 47.193 kb on + strandat 47.194 kb on - strandat 47.194 kb on - strandat 47.215 kb on + strandat 47.234 kb on + strandat 47.234 kb on + strandat 47.235 kb on - strandat 47.235 kb on - strandat 47.235 kb on - strandat 47.273 kb on - strandat 47.280 kb on + strandat 47.281 kb on - strandat 47.309 kb on - strandat 47.353 kb on - strandat 47.370 kb on + strandat 47.373 kb on + strandat 47.779 kb on + strandat 47.792 kb on + strandat 47.792 kb on + strandat 47.792 kb on + strandat 47.793 kb on - strandat 47.796 kb on + strandat 47.877 kb on + strandat 47.904 kb on + strandat 47.905 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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45,736 + Pf6N2E2_15 0.60 -0.3
45,775 + Pf6N2E2_15 0.62 -1.0
45,776 - Pf6N2E2_15 0.62 -1.1
45,776 - Pf6N2E2_15 0.62 +1.8
45,979 + Pf6N2E2_15 0.75 +0.6
46,139 + Pf6N2E2_15 0.85 -0.1
46,140 - Pf6N2E2_15 0.85 +0.5
46,285 - -0.5
46,348 + -0.1
46,401 - +1.1
46,831 - Pf6N2E2_16 0.76 -1.2
46,914 + -2.3
46,921 + -0.5
46,921 + -2.5
46,921 + -1.7
46,922 - +0.7
46,922 - -0.3
46,922 - -0.3
46,922 - +1.5
46,922 - -0.8
46,924 + -0.3
46,924 + -0.8
46,924 + -0.8
46,927 + +0.4
46,927 + -0.7
46,928 - +0.7
46,928 - +1.7
47,001 + +1.8
47,002 - +0.6
47,070 + +0.8
47,070 + +0.2
47,070 + +0.4
47,070 + +1.1
47,094 + -0.6
47,094 + +0.2
47,094 + -1.2
47,145 + -2.0
47,146 - -2.0
47,193 + -2.8
47,193 + +0.0
47,194 - -1.0
47,194 - -0.6
47,215 + +1.0
47,234 + +0.5
47,234 + -0.4
47,235 - -1.3
47,235 - -1.0
47,235 - -0.3
47,273 - -0.1
47,280 + -1.2
47,281 - +1.6
47,309 - +0.5
47,353 - +1.6
47,370 + +1.4
47,373 + +0.1
47,779 + -0.2
47,792 + -0.7
47,792 + +0.7
47,792 + +1.3
47,793 - +1.1
47,796 + +0.4
47,877 + -1.0
47,904 + -2.7
47,905 - +0.5

Or see this region's nucleotide sequence