Strain Fitness in Marinobacter adhaerens HP15 around HP15_4179

Experiment: D-Alanine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_4177 and HP15_4178 are separated by 16 nucleotidesHP15_4178 and HP15_4179 overlap by 1 nucleotidesHP15_4179 and HP15_4180 are separated by 2 nucleotides HP15_4177: HP15_4177 - acetyl-CoA synthetase, at 4,416,268 to 4,418,256 _4177 HP15_4178: HP15_4178 - pyruvate carboxyltransferase, at 4,418,273 to 4,419,184 _4178 HP15_4179: HP15_4179 - methylcrotonyl-CoA carboxylase, alpha subunit, at 4,419,184 to 4,421,178 _4179 HP15_4180: HP15_4180 - enoyl-CoA hydratase/isomerase, at 4,421,181 to 4,421,888 _4180 Position (kb) 4419 4420 4421 4422Strain fitness (log2 ratio) -1 0 1 2at 4418.450 kb on - strand, within HP15_4178at 4418.461 kb on - strand, within HP15_4178at 4418.595 kb on - strand, within HP15_4178at 4418.710 kb on + strand, within HP15_4178at 4418.813 kb on + strand, within HP15_4178at 4418.952 kb on - strand, within HP15_4178at 4419.061 kb on - strand, within HP15_4178at 4419.574 kb on + strand, within HP15_4179at 4419.591 kb on - strand, within HP15_4179at 4420.064 kb on - strand, within HP15_4179at 4420.372 kb on + strand, within HP15_4179at 4420.485 kb on + strand, within HP15_4179at 4420.773 kb on + strand, within HP15_4179at 4420.971 kb on - strand, within HP15_4179at 4421.063 kb on + strandat 4421.068 kb on + strandat 4421.451 kb on + strand, within HP15_4180at 4421.643 kb on + strand, within HP15_4180at 4421.643 kb on + strand, within HP15_4180at 4421.668 kb on - strand, within HP15_4180at 4421.780 kb on + strand, within HP15_4180at 4421.791 kb on + strand, within HP15_4180

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (N)
remove
4,418,450 - HP15_4178 0.19 -0.3
4,418,461 - HP15_4178 0.21 +1.1
4,418,595 - HP15_4178 0.35 +1.0
4,418,710 + HP15_4178 0.48 +1.2
4,418,813 + HP15_4178 0.59 -0.0
4,418,952 - HP15_4178 0.74 -0.1
4,419,061 - HP15_4178 0.86 -0.2
4,419,574 + HP15_4179 0.20 -0.7
4,419,591 - HP15_4179 0.20 +0.3
4,420,064 - HP15_4179 0.44 +1.4
4,420,372 + HP15_4179 0.60 +0.1
4,420,485 + HP15_4179 0.65 +0.4
4,420,773 + HP15_4179 0.80 -0.3
4,420,971 - HP15_4179 0.90 -0.2
4,421,063 + -0.0
4,421,068 + +0.3
4,421,451 + HP15_4180 0.38 +0.1
4,421,643 + HP15_4180 0.65 +2.1
4,421,643 + HP15_4180 0.65 +0.5
4,421,668 - HP15_4180 0.69 +0.7
4,421,780 + HP15_4180 0.85 +0.7
4,421,791 + HP15_4180 0.86 +0.4

Or see this region's nucleotide sequence