Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1609 and HP15_1610 are separated by 3 nucleotides HP15_1610 and HP15_1611 are separated by 56 nucleotides HP15_1611 and HP15_1612 are separated by 26 nucleotides
HP15_1609: HP15_1609 - general secretion pathway protein L, at 1,704,817 to 1,706,121
_1609
HP15_1610: HP15_1610 - general secretion pathway protein M, at 1,706,125 to 1,706,655
_1610
HP15_1611: HP15_1611 - GCN5-related N-acetyltransferase, at 1,706,712 to 1,707,383
_1611
HP15_1612: HP15_1612 - protein containing FAD-dependent pyridine nucleotide-disulfide oxidoreductase / Pyridine nucleotide-disulfide oxidoreductase, dimerization, at 1,707,410 to 1,708,771
_1612
Position (kb)
1706
1707
1708 Strain fitness (log2 ratio)
-2
-1
0
1 at 1706.018 kb on - strand at 1706.215 kb on + strand, within HP15_1610 at 1706.531 kb on + strand, within HP15_1610 at 1706.596 kb on + strand, within HP15_1610 at 1706.604 kb on - strand at 1706.799 kb on - strand, within HP15_1611 at 1707.033 kb on + strand, within HP15_1611 at 1707.053 kb on - strand, within HP15_1611 at 1707.053 kb on - strand, within HP15_1611 at 1707.486 kb on - strand at 1707.515 kb on + strand at 1707.651 kb on + strand, within HP15_1612 at 1707.944 kb on + strand, within HP15_1612 at 1707.952 kb on - strand, within HP15_1612 at 1707.981 kb on + strand, within HP15_1612 at 1708.148 kb on + strand, within HP15_1612 at 1708.173 kb on + strand, within HP15_1612 at 1708.229 kb on - strand, within HP15_1612 at 1708.229 kb on - strand, within HP15_1612 at 1708.285 kb on + strand, within HP15_1612 at 1708.321 kb on - strand, within HP15_1612 at 1708.356 kb on + strand, within HP15_1612 at 1708.366 kb on + strand, within HP15_1612 at 1708.381 kb on - strand, within HP15_1612
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 1,706,018 - -0.8 1,706,215 + HP15_1610 0.17 -0.6 1,706,531 + HP15_1610 0.76 -0.4 1,706,596 + HP15_1610 0.89 -0.4 1,706,604 - -0.9 1,706,799 - HP15_1611 0.13 -0.5 1,707,033 + HP15_1611 0.48 +0.0 1,707,053 - HP15_1611 0.51 -0.3 1,707,053 - HP15_1611 0.51 -1.8 1,707,486 - +1.2 1,707,515 + -0.0 1,707,651 + HP15_1612 0.18 +0.7 1,707,944 + HP15_1612 0.39 +0.5 1,707,952 - HP15_1612 0.40 +0.9 1,707,981 + HP15_1612 0.42 +0.0 1,708,148 + HP15_1612 0.54 -0.6 1,708,173 + HP15_1612 0.56 -1.1 1,708,229 - HP15_1612 0.60 +0.5 1,708,229 - HP15_1612 0.60 -0.1 1,708,285 + HP15_1612 0.64 +0.0 1,708,321 - HP15_1612 0.67 +0.4 1,708,356 + HP15_1612 0.69 +1.4 1,708,366 + HP15_1612 0.70 +0.0 1,708,381 - HP15_1612 0.71 +0.1
Or see this region's nucleotide sequence