Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1604 and HP15_1605 are separated by 6 nucleotides HP15_1605 and HP15_1606 overlap by 4 nucleotides HP15_1606 and HP15_1607 are separated by 59 nucleotides HP15_1607 and HP15_1608 are separated by 6 nucleotides
HP15_1604: HP15_1604 - general secretion pathway protein G, at 1,701,667 to 1,702,119
_1604
HP15_1605: HP15_1605 - general secretion pathway protein H, at 1,702,126 to 1,702,656
_1605
HP15_1606: HP15_1606 - general secretion pathway protein I-like protein, at 1,702,653 to 1,703,027
_1606
HP15_1607: HP15_1607 - general secretion pathway protein J-like protein, at 1,703,087 to 1,703,803
_1607
HP15_1608: HP15_1608 - general secretion pathway protein K-like protein, at 1,703,810 to 1,704,814
_1608
Position (kb)
1703
1704 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1702.122 kb on - strand at 1702.122 kb on - strand at 1702.144 kb on - strand at 1702.169 kb on - strand at 1702.280 kb on - strand, within HP15_1605 at 1702.289 kb on - strand, within HP15_1605 at 1702.500 kb on + strand, within HP15_1605 at 1702.612 kb on - strand at 1702.883 kb on + strand, within HP15_1606 at 1703.335 kb on - strand, within HP15_1607 at 1703.374 kb on - strand, within HP15_1607 at 1703.394 kb on - strand, within HP15_1607 at 1703.649 kb on + strand, within HP15_1607 at 1703.690 kb on + strand, within HP15_1607 at 1703.762 kb on - strand at 1703.819 kb on + strand at 1704.070 kb on + strand, within HP15_1608 at 1704.078 kb on - strand, within HP15_1608 at 1704.078 kb on - strand, within HP15_1608 at 1704.147 kb on - strand, within HP15_1608 at 1704.351 kb on - strand, within HP15_1608 at 1704.537 kb on - strand, within HP15_1608 at 1704.563 kb on + strand, within HP15_1608
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 1,702,122 - -1.0 1,702,122 - -0.9 1,702,144 - -0.1 1,702,169 - -0.7 1,702,280 - HP15_1605 0.29 -0.9 1,702,289 - HP15_1605 0.31 -1.8 1,702,500 + HP15_1605 0.70 -3.2 1,702,612 - -1.4 1,702,883 + HP15_1606 0.61 +0.3 1,703,335 - HP15_1607 0.35 +0.1 1,703,374 - HP15_1607 0.40 -0.6 1,703,394 - HP15_1607 0.43 -0.2 1,703,649 + HP15_1607 0.78 -0.2 1,703,690 + HP15_1607 0.84 -1.4 1,703,762 - +0.3 1,703,819 + +1.1 1,704,070 + HP15_1608 0.26 -1.0 1,704,078 - HP15_1608 0.27 -0.4 1,704,078 - HP15_1608 0.27 -3.1 1,704,147 - HP15_1608 0.34 -2.0 1,704,351 - HP15_1608 0.54 -0.9 1,704,537 - HP15_1608 0.72 -2.6 1,704,563 + HP15_1608 0.75 -0.0
Or see this region's nucleotide sequence