Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01824

Experiment: PYE with CHIR-090 2 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with CHIR-090 2 ug/mL
1,949,336	-		CCNA_01822	0.70	-2.0
1,949,346	+		CCNA_01822	0.70	-2.2
1,949,354	-		CCNA_01822	0.71	+0.1
1,949,368	+		CCNA_01822	0.72	-0.6
1,949,368	+		CCNA_01822	0.72	-0.1
1,949,368	+		CCNA_01822	0.72	+1.3
1,949,368	+		CCNA_01822	0.72	-1.1
1,949,368	+				+2.0
1,949,368	+		CCNA_01822	0.72	-1.0
1,949,368	+		CCNA_01822	0.72	-1.2
1,949,368	+		CCNA_01822	0.72	-0.7
1,949,368	+		CCNA_01822	0.72	-0.9
1,949,376	-		CCNA_01822	0.73	+0.9
1,949,376	-		CCNA_01822	0.73	+0.2
1,949,376	-		CCNA_01822	0.73	+0.0
1,949,376	-		CCNA_01822	0.73	-1.2
1,949,376	-		CCNA_01822	0.73	-0.5
1,949,376	-		CCNA_01822	0.73	+1.6
1,949,376	-		CCNA_01822	0.73	+0.2
1,949,398	+		CCNA_01822	0.74	+1.4
1,949,452	+		CCNA_01822	0.78	+0.4
1,949,452	+		CCNA_01822	0.78	-0.6
1,949,452	+		CCNA_01822	0.78	-1.2
1,949,452	+		CCNA_01822	0.78	+1.9
1,949,460	-		CCNA_01822	0.79	+0.4
1,949,460	-		CCNA_01822	0.79	+0.3
1,949,460	-		CCNA_01822	0.79	-1.1
1,949,460	-		CCNA_01822	0.79	+0.4
1,949,460	-		CCNA_01822	0.79	-0.4
1,949,501	+		CCNA_01822	0.81	-0.6
1,949,586	-		CCNA_01822	0.87	-0.8
1,949,609	+		CCNA_01822	0.89	+0.6
1,949,635	-				+2.2
1,949,649	-				+0.2
1,949,649	-				-0.5
1,949,651	+				-0.2
1,949,657	+				-1.8
1,949,678	-				-0.5
1,949,684	-				+0.3
1,949,744	-				-0.2
1,949,763	+				+0.5
1,949,771	-				+0.2
1,949,851	+				+0.8
1,949,851	+				-1.5
1,949,859	-				+0.6
1,949,911	+				-0.1
1,949,911	+				-1.0
1,949,911	+				-1.5
1,949,911	+				-0.4
1,949,911	+				-0.4
1,949,952	-				+0.8
1,949,987	-				+0.7
1,950,004	-				+0.1
1,950,100	+		CCNA_01823	0.27	+1.0
1,950,138	-		CCNA_01823	0.45	+0.3
1,950,157	-		CCNA_01823	0.53	-1.8
1,950,314	+				-0.4
1,950,314	+				+0.2
1,950,332	+				-0.3
1,950,340	-				-1.1
1,950,371	+		CCNA_01824	0.11	+0.0
1,950,371	+		CCNA_01824	0.11	+0.3
1,950,379	-		CCNA_01824	0.13	-0.4
1,950,381	+		CCNA_01824	0.14	+0.7
1,950,381	+		CCNA_01824	0.14	+1.2
1,950,389	-		CCNA_01824	0.16	+0.2
1,950,389	-		CCNA_01824	0.16	+0.5
1,950,438	-		CCNA_01824	0.31	-1.7
1,950,448	-		CCNA_01824	0.34	+1.6
1,950,448	-		CCNA_01824	0.34	-0.1
1,950,450	+		CCNA_01824	0.35	+0.7
1,950,458	-		CCNA_01824	0.37	-1.1
1,950,463	-		CCNA_01824	0.38	+1.5
1,950,463	-		CCNA_01824	0.38	-1.3
1,950,483	-		CCNA_01824	0.44	+0.5
1,950,534	+		CCNA_01824	0.60	+0.2
1,950,551	+		CCNA_01824	0.65	+0.1
1,950,579	+		CCNA_01824	0.73	+1.3
1,950,585	+		CCNA_01824	0.75	+0.3
1,950,593	-		CCNA_01824	0.77	-0.2
1,950,597	+		CCNA_01824	0.78	-0.0
1,950,619	-		CCNA_01824	0.85	+0.8
1,950,619	-		CCNA_01824	0.85	+0.4
1,950,619	-		CCNA_01824	0.85	+0.7
1,950,642	+				+0.2
1,950,656	-				+0.2
1,950,677	-				+0.6
1,950,716	+				-2.2
1,950,749	+				+1.6
1,950,749	+				-1.0
1,950,752	-				+0.1
1,950,752	-				-1.1
1,950,754	+				-0.2
1,950,769	+				+1.3
1,950,779	+				+0.0
1,950,779	+				+1.0
1,950,787	-				-0.5
1,950,794	-				+0.4
1,950,824	-				+2.2
1,950,828	+				+0.0
1,950,828	+				-0.1
1,950,828	+				+0.4
1,950,828	+				-3.7
1,950,836	-				+0.9
1,950,836	-				-1.0
1,950,853	-				-0.3
1,950,883	+				+0.7
1,950,883	+				-1.3
1,950,891	-				+0.9
1,950,891	-				-0.2
1,950,898	-				+0.6
1,950,921	-				-1.6
1,950,941	+				+0.4
1,951,024	-				-1.0
1,951,062	+				-0.1
1,951,116	+				-1.1
1,951,124	-				-1.3
1,951,145	-				-0.1
1,951,152	+				+0.0
1,951,152	+				-1.2
1,951,235	-				-0.2
1,951,283	+				-0.3
1,951,310	+				-0.4
1,951,310	+				+0.2
1,951,318	-				-1.4
1,951,318	-				+0.4
1,951,320	+				-0.2
1,951,320	+				-1.0
1,951,325	+				+0.4
1,951,325	+				+0.5
1,951,328	-				-0.3
1,951,333	-				+0.5
1,951,355	+				+0.1
1,951,429	+				+1.2
1,951,449	+				-0.2
1,951,449	+				+1.2
1,951,468	+				-0.7
1,951,487	+				-0.9
1,951,487	+				+0.2
1,951,495	-		CCNA_01826	0.10	-1.5
1,951,558	+		CCNA_01826	0.13	-0.9
1,951,607	-		CCNA_01826	0.16	+0.7
1,951,640	-		CCNA_01826	0.18	+0.7
1,951,645	-				+1.4