Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01335

Experiment: PYE with CHIR-090 2 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01333 and CCNA_01334 are separated by 166 nucleotidesCCNA_01334 and CCNA_01335 overlap by 1 nucleotidesCCNA_01335 and CCNA_01336 are separated by 171 nucleotides CCNA_01333: CCNA_01333 - hypothetical protein, at 1,446,332 to 1,446,724 _01333 CCNA_01334: CCNA_01334 - ABC2-family membrane transporter, at 1,446,891 to 1,447,721 _01334 CCNA_01335: CCNA_01335 - ABC-type multidrug transport system, ATPase component, at 1,447,721 to 1,448,638 _01335 CCNA_01336: CCNA_01336 - phosphodiesterase I/nucleotide pyrophosphatase, at 1,448,810 to 1,450,039 _01336 Position (kb) 1447 1448 1449Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1446.769 kb on - strandat 1446.769 kb on - strandat 1446.813 kb on - strandat 1446.861 kb on - strandat 1446.862 kb on - strandat 1446.869 kb on + strandat 1446.887 kb on - strandat 1446.888 kb on - strandat 1447.028 kb on - strand, within CCNA_01334at 1447.037 kb on + strand, within CCNA_01334at 1447.070 kb on + strand, within CCNA_01334at 1447.092 kb on - strand, within CCNA_01334at 1447.097 kb on - strand, within CCNA_01334at 1447.116 kb on + strand, within CCNA_01334at 1447.119 kb on - strand, within CCNA_01334at 1447.124 kb on - strand, within CCNA_01334at 1447.129 kb on - strand, within CCNA_01334at 1447.133 kb on - strand, within CCNA_01334at 1447.150 kb on - strand, within CCNA_01334at 1447.195 kb on - strand, within CCNA_01334at 1447.215 kb on + strand, within CCNA_01334at 1447.223 kb on - strand, within CCNA_01334at 1447.242 kb on - strand, within CCNA_01334at 1447.305 kb on + strand, within CCNA_01334at 1447.330 kb on - strand, within CCNA_01334at 1447.348 kb on - strand, within CCNA_01334at 1447.360 kb on + strand, within CCNA_01334at 1447.360 kb on + strand, within CCNA_01334at 1447.360 kb on + strand, within CCNA_01334at 1447.360 kb on + strand, within CCNA_01334at 1447.360 kb on + strand, within CCNA_01334at 1447.360 kb on + strand, within CCNA_01334at 1447.360 kb on + strand, within CCNA_01334at 1447.360 kb on + strand, within CCNA_01334at 1447.368 kb on - strand, within CCNA_01334at 1447.368 kb on - strand, within CCNA_01334at 1447.368 kb on - strand, within CCNA_01334at 1447.368 kb on - strand, within CCNA_01334at 1447.368 kb on - strand, within CCNA_01334at 1447.368 kb on - strand, within CCNA_01334at 1447.368 kb on - strand, within CCNA_01334at 1447.368 kb on - strand, within CCNA_01334at 1447.368 kb on - strand, within CCNA_01334at 1447.368 kb on - strandat 1447.381 kb on + strand, within CCNA_01334at 1447.391 kb on + strand, within CCNA_01334at 1447.412 kb on + strand, within CCNA_01334at 1447.417 kb on + strand, within CCNA_01334at 1447.424 kb on - strand, within CCNA_01334at 1447.444 kb on + strand, within CCNA_01334at 1447.489 kb on + strand, within CCNA_01334at 1447.489 kb on + strand, within CCNA_01334at 1447.521 kb on + strand, within CCNA_01334at 1447.527 kb on - strand, within CCNA_01334at 1447.527 kb on - strand, within CCNA_01334at 1447.533 kb on + strand, within CCNA_01334at 1447.533 kb on + strand, within CCNA_01334at 1447.539 kb on - strand, within CCNA_01334at 1447.553 kb on + strand, within CCNA_01334at 1447.599 kb on + strand, within CCNA_01334at 1447.612 kb on - strand, within CCNA_01334at 1447.622 kb on + strand, within CCNA_01334at 1447.629 kb on + strand, within CCNA_01334at 1447.630 kb on - strand, within CCNA_01334at 1447.652 kb on + strandat 1447.654 kb on + strandat 1447.662 kb on - strandat 1447.662 kb on - strandat 1447.726 kb on - strandat 1447.838 kb on - strand, within CCNA_01335at 1447.885 kb on + strandat 1447.888 kb on - strand, within CCNA_01335at 1447.888 kb on - strand, within CCNA_01335at 1447.888 kb on - strand, within CCNA_01335at 1447.893 kb on - strand, within CCNA_01335at 1447.927 kb on - strand, within CCNA_01335at 1447.941 kb on - strand, within CCNA_01335at 1447.960 kb on - strand, within CCNA_01335at 1447.998 kb on - strand, within CCNA_01335at 1448.010 kb on + strand, within CCNA_01335at 1448.010 kb on + strand, within CCNA_01335at 1448.055 kb on + strand, within CCNA_01335at 1448.063 kb on - strand, within CCNA_01335at 1448.063 kb on - strand, within CCNA_01335at 1448.063 kb on - strand, within CCNA_01335at 1448.065 kb on + strand, within CCNA_01335at 1448.080 kb on - strand, within CCNA_01335at 1448.100 kb on + strand, within CCNA_01335at 1448.108 kb on - strand, within CCNA_01335at 1448.163 kb on - strand, within CCNA_01335at 1448.163 kb on - strand, within CCNA_01335at 1448.228 kb on + strand, within CCNA_01335at 1448.229 kb on - strand, within CCNA_01335at 1448.229 kb on - strand, within CCNA_01335at 1448.233 kb on + strand, within CCNA_01335at 1448.233 kb on + strand, within CCNA_01335at 1448.233 kb on + strand, within CCNA_01335at 1448.233 kb on + strand, within CCNA_01335at 1448.233 kb on + strand, within CCNA_01335at 1448.233 kb on + strand, within CCNA_01335at 1448.233 kb on + strand, within CCNA_01335at 1448.233 kb on + strand, within CCNA_01335at 1448.241 kb on - strand, within CCNA_01335at 1448.241 kb on - strand, within CCNA_01335at 1448.241 kb on - strand, within CCNA_01335at 1448.241 kb on - strand, within CCNA_01335at 1448.241 kb on - strand, within CCNA_01335at 1448.241 kb on - strand, within CCNA_01335at 1448.278 kb on + strand, within CCNA_01335at 1448.287 kb on - strand, within CCNA_01335at 1448.296 kb on + strand, within CCNA_01335at 1448.373 kb on - strand, within CCNA_01335at 1448.373 kb on - strand, within CCNA_01335at 1448.391 kb on + strand, within CCNA_01335at 1448.399 kb on - strand, within CCNA_01335at 1448.409 kb on + strand, within CCNA_01335at 1448.417 kb on - strand, within CCNA_01335at 1448.422 kb on - strand, within CCNA_01335at 1448.455 kb on - strand, within CCNA_01335at 1448.482 kb on + strand, within CCNA_01335at 1448.482 kb on + strand, within CCNA_01335at 1448.490 kb on - strand, within CCNA_01335at 1448.490 kb on - strand, within CCNA_01335at 1448.501 kb on - strand, within CCNA_01335at 1448.511 kb on - strand, within CCNA_01335at 1448.612 kb on + strandat 1448.653 kb on - strandat 1448.681 kb on + strandat 1448.681 kb on + strandat 1448.717 kb on - strandat 1448.718 kb on - strandat 1448.718 kb on - strandat 1448.754 kb on - strandat 1448.798 kb on - strandat 1448.813 kb on + strandat 1448.844 kb on - strandat 1448.849 kb on + strandat 1448.849 kb on + strandat 1448.849 kb on + strandat 1448.850 kb on - strandat 1448.857 kb on - strandat 1448.985 kb on - strand, within CCNA_01336at 1449.049 kb on + strand, within CCNA_01336at 1449.091 kb on + strand, within CCNA_01336at 1449.138 kb on + strand, within CCNA_01336at 1449.171 kb on - strand, within CCNA_01336at 1449.191 kb on - strand, within CCNA_01336at 1449.191 kb on - strand, within CCNA_01336at 1449.217 kb on + strand, within CCNA_01336at 1449.217 kb on + strand, within CCNA_01336at 1449.251 kb on + strand, within CCNA_01336at 1449.281 kb on - strand, within CCNA_01336at 1449.286 kb on - strand, within CCNA_01336at 1449.291 kb on - strand, within CCNA_01336at 1449.291 kb on - strand, within CCNA_01336at 1449.291 kb on - strand, within CCNA_01336at 1449.314 kb on + strand, within CCNA_01336at 1449.322 kb on - strand, within CCNA_01336at 1449.322 kb on - strand, within CCNA_01336at 1449.324 kb on + strand, within CCNA_01336at 1449.336 kb on - strand, within CCNA_01336at 1449.385 kb on + strand, within CCNA_01336at 1449.385 kb on + strand, within CCNA_01336at 1449.391 kb on + strand, within CCNA_01336at 1449.414 kb on + strand, within CCNA_01336at 1449.414 kb on + strand, within CCNA_01336at 1449.422 kb on - strand, within CCNA_01336at 1449.455 kb on - strand, within CCNA_01336at 1449.489 kb on + strand, within CCNA_01336at 1449.490 kb on - strandat 1449.493 kb on + strand, within CCNA_01336at 1449.563 kb on + strand, within CCNA_01336at 1449.563 kb on + strand, within CCNA_01336at 1449.563 kb on + strand, within CCNA_01336at 1449.571 kb on - strand, within CCNA_01336at 1449.582 kb on - strand, within CCNA_01336at 1449.636 kb on + strand, within CCNA_01336

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 2 ug/mL
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1,446,769 - +0.2
1,446,769 - +0.6
1,446,813 - +1.3
1,446,861 - +1.5
1,446,862 - +1.0
1,446,869 + +0.6
1,446,887 - +1.0
1,446,888 - -2.3
1,447,028 - CCNA_01334 0.16 +0.2
1,447,037 + CCNA_01334 0.18 -1.0
1,447,070 + CCNA_01334 0.22 -1.3
1,447,092 - CCNA_01334 0.24 +0.4
1,447,097 - CCNA_01334 0.25 +1.0
1,447,116 + CCNA_01334 0.27 -1.6
1,447,119 - CCNA_01334 0.27 -2.1
1,447,124 - CCNA_01334 0.28 +0.5
1,447,129 - CCNA_01334 0.29 +0.6
1,447,133 - CCNA_01334 0.29 +0.1
1,447,150 - CCNA_01334 0.31 +0.8
1,447,195 - CCNA_01334 0.37 +0.4
1,447,215 + CCNA_01334 0.39 -0.2
1,447,223 - CCNA_01334 0.40 -0.6
1,447,242 - CCNA_01334 0.42 +1.4
1,447,305 + CCNA_01334 0.50 -0.0
1,447,330 - CCNA_01334 0.53 +0.4
1,447,348 - CCNA_01334 0.55 +1.0
1,447,360 + CCNA_01334 0.56 -0.2
1,447,360 + CCNA_01334 0.56 -2.0
1,447,360 + CCNA_01334 0.56 +0.3
1,447,360 + CCNA_01334 0.56 -0.3
1,447,360 + CCNA_01334 0.56 +0.3
1,447,360 + CCNA_01334 0.56 -2.3
1,447,360 + CCNA_01334 0.56 -0.5
1,447,360 + CCNA_01334 0.56 -1.2
1,447,368 - CCNA_01334 0.57 -0.4
1,447,368 - CCNA_01334 0.57 -0.6
1,447,368 - CCNA_01334 0.57 +0.8
1,447,368 - CCNA_01334 0.57 -0.2
1,447,368 - CCNA_01334 0.57 -0.5
1,447,368 - CCNA_01334 0.57 -0.0
1,447,368 - CCNA_01334 0.57 +0.9
1,447,368 - CCNA_01334 0.57 +0.6
1,447,368 - CCNA_01334 0.57 +0.1
1,447,368 - +1.9
1,447,381 + CCNA_01334 0.59 +1.1
1,447,391 + CCNA_01334 0.60 -1.3
1,447,412 + CCNA_01334 0.63 +0.7
1,447,417 + CCNA_01334 0.63 -0.3
1,447,424 - CCNA_01334 0.64 -0.8
1,447,444 + CCNA_01334 0.67 +0.1
1,447,489 + CCNA_01334 0.72 -1.9
1,447,489 + CCNA_01334 0.72 +0.4
1,447,521 + CCNA_01334 0.76 -1.2
1,447,527 - CCNA_01334 0.77 -2.4
1,447,527 - CCNA_01334 0.77 -1.8
1,447,533 + CCNA_01334 0.77 -0.4
1,447,533 + CCNA_01334 0.77 -0.1
1,447,539 - CCNA_01334 0.78 -0.1
1,447,553 + CCNA_01334 0.80 -0.6
1,447,599 + CCNA_01334 0.85 -1.3
1,447,612 - CCNA_01334 0.87 -1.4
1,447,622 + CCNA_01334 0.88 +0.0
1,447,629 + CCNA_01334 0.89 +1.2
1,447,630 - CCNA_01334 0.89 -0.6
1,447,652 + -0.1
1,447,654 + -1.9
1,447,662 - -0.1
1,447,662 - -0.2
1,447,726 - -0.5
1,447,838 - CCNA_01335 0.13 -0.3
1,447,885 + +0.3
1,447,888 - CCNA_01335 0.18 +0.4
1,447,888 - CCNA_01335 0.18 -2.1
1,447,888 - CCNA_01335 0.18 +0.5
1,447,893 - CCNA_01335 0.19 -0.3
1,447,927 - CCNA_01335 0.22 -0.8
1,447,941 - CCNA_01335 0.24 +0.1
1,447,960 - CCNA_01335 0.26 +0.7
1,447,998 - CCNA_01335 0.30 +2.0
1,448,010 + CCNA_01335 0.31 +2.4
1,448,010 + CCNA_01335 0.31 +1.1
1,448,055 + CCNA_01335 0.36 -1.5
1,448,063 - CCNA_01335 0.37 +0.9
1,448,063 - CCNA_01335 0.37 +0.3
1,448,063 - CCNA_01335 0.37 +0.1
1,448,065 + CCNA_01335 0.37 +1.2
1,448,080 - CCNA_01335 0.39 +0.2
1,448,100 + CCNA_01335 0.41 +2.0
1,448,108 - CCNA_01335 0.42 +0.6
1,448,163 - CCNA_01335 0.48 -0.2
1,448,163 - CCNA_01335 0.48 +0.1
1,448,228 + CCNA_01335 0.55 -0.1
1,448,229 - CCNA_01335 0.55 +0.4
1,448,229 - CCNA_01335 0.55 +0.4
1,448,233 + CCNA_01335 0.56 +0.2
1,448,233 + CCNA_01335 0.56 -1.7
1,448,233 + CCNA_01335 0.56 +0.3
1,448,233 + CCNA_01335 0.56 +1.6
1,448,233 + CCNA_01335 0.56 +1.8
1,448,233 + CCNA_01335 0.56 +0.0
1,448,233 + CCNA_01335 0.56 -0.5
1,448,233 + CCNA_01335 0.56 -0.6
1,448,241 - CCNA_01335 0.57 +0.5
1,448,241 - CCNA_01335 0.57 +0.0
1,448,241 - CCNA_01335 0.57 +0.5
1,448,241 - CCNA_01335 0.57 +0.6
1,448,241 - CCNA_01335 0.57 -2.3
1,448,241 - CCNA_01335 0.57 +1.7
1,448,278 + CCNA_01335 0.61 +0.9
1,448,287 - CCNA_01335 0.62 +0.6
1,448,296 + CCNA_01335 0.63 -0.0
1,448,373 - CCNA_01335 0.71 +1.6
1,448,373 - CCNA_01335 0.71 +0.2
1,448,391 + CCNA_01335 0.73 +1.2
1,448,399 - CCNA_01335 0.74 +0.8
1,448,409 + CCNA_01335 0.75 +0.6
1,448,417 - CCNA_01335 0.76 +0.1
1,448,422 - CCNA_01335 0.76 -0.8
1,448,455 - CCNA_01335 0.80 -0.9
1,448,482 + CCNA_01335 0.83 -0.3
1,448,482 + CCNA_01335 0.83 +0.1
1,448,490 - CCNA_01335 0.84 -1.3
1,448,490 - CCNA_01335 0.84 +0.4
1,448,501 - CCNA_01335 0.85 -0.4
1,448,511 - CCNA_01335 0.86 +2.1
1,448,612 + -1.4
1,448,653 - -0.6
1,448,681 + -1.3
1,448,681 + -2.0
1,448,717 - -0.6
1,448,718 - -0.0
1,448,718 - -0.6
1,448,754 - +1.1
1,448,798 - +0.2
1,448,813 + +0.4
1,448,844 - -1.2
1,448,849 + +0.3
1,448,849 + -0.3
1,448,849 + -0.4
1,448,850 - +0.3
1,448,857 - -1.8
1,448,985 - CCNA_01336 0.14 -1.4
1,449,049 + CCNA_01336 0.19 +0.2
1,449,091 + CCNA_01336 0.23 +0.8
1,449,138 + CCNA_01336 0.27 +0.2
1,449,171 - CCNA_01336 0.29 -0.4
1,449,191 - CCNA_01336 0.31 +0.9
1,449,191 - CCNA_01336 0.31 +0.3
1,449,217 + CCNA_01336 0.33 +0.4
1,449,217 + CCNA_01336 0.33 -1.1
1,449,251 + CCNA_01336 0.36 +0.3
1,449,281 - CCNA_01336 0.38 -1.1
1,449,286 - CCNA_01336 0.39 -2.1
1,449,291 - CCNA_01336 0.39 -0.3
1,449,291 - CCNA_01336 0.39 -1.9
1,449,291 - CCNA_01336 0.39 -0.3
1,449,314 + CCNA_01336 0.41 -1.2
1,449,322 - CCNA_01336 0.42 -0.4
1,449,322 - CCNA_01336 0.42 -2.1
1,449,324 + CCNA_01336 0.42 -2.8
1,449,336 - CCNA_01336 0.43 +0.6
1,449,385 + CCNA_01336 0.47 -0.3
1,449,385 + CCNA_01336 0.47 -0.0
1,449,391 + CCNA_01336 0.47 +2.1
1,449,414 + CCNA_01336 0.49 -0.0
1,449,414 + CCNA_01336 0.49 +1.0
1,449,422 - CCNA_01336 0.50 -0.0
1,449,455 - CCNA_01336 0.52 -1.0
1,449,489 + CCNA_01336 0.55 -2.2
1,449,490 - -1.0
1,449,493 + CCNA_01336 0.56 +1.0
1,449,563 + CCNA_01336 0.61 -3.0
1,449,563 + CCNA_01336 0.61 +0.9
1,449,563 + CCNA_01336 0.61 -0.1
1,449,571 - CCNA_01336 0.62 -2.5
1,449,582 - CCNA_01336 0.63 -0.4
1,449,636 + CCNA_01336 0.67 +0.6

Or see this region's nucleotide sequence