Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01267

Experiment: PYE with CHIR-090 2 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01264 and CCNA_01265 are separated by 114 nucleotidesCCNA_01265 and CCNA_01266 are separated by 98 nucleotidesCCNA_01266 and CCNA_01267 overlap by 4 nucleotidesCCNA_01267 and CCNA_01268 are separated by 77 nucleotidesCCNA_01268 and CCNA_01269 are separated by 280 nucleotides CCNA_01264: CCNA_01264 - transposase, DDE family, at 1,394,767 to 1,395,261 _01264 CCNA_01265: CCNA_01265 - hypothetical protein, at 1,395,376 to 1,395,498 _01265 CCNA_01266: CCNA_01266 - NTF2 superfamily protein, at 1,395,597 to 1,395,953 _01266 CCNA_01267: CCNA_01267 - NTF2 superfamily protein, at 1,395,950 to 1,396,687 _01267 CCNA_01268: CCNA_01268 - cytochrome c, at 1,396,765 to 1,397,271 _01268 CCNA_01269: CCNA_01269 - GcrA superfamily protein, at 1,397,552 to 1,398,055 _01269 Position (kb) 1395 1396 1397Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1395.624 kb on + strandat 1395.624 kb on + strandat 1395.632 kb on - strandat 1395.651 kb on + strand, within CCNA_01266at 1395.659 kb on - strand, within CCNA_01266at 1395.673 kb on + strand, within CCNA_01266at 1395.673 kb on + strand, within CCNA_01266at 1395.673 kb on + strand, within CCNA_01266at 1395.673 kb on + strand, within CCNA_01266at 1395.678 kb on + strand, within CCNA_01266at 1395.681 kb on - strand, within CCNA_01266at 1395.681 kb on - strand, within CCNA_01266at 1395.686 kb on - strand, within CCNA_01266at 1395.713 kb on - strand, within CCNA_01266at 1395.713 kb on - strand, within CCNA_01266at 1395.713 kb on - strand, within CCNA_01266at 1395.713 kb on - strand, within CCNA_01266at 1395.776 kb on + strand, within CCNA_01266at 1395.823 kb on + strand, within CCNA_01266at 1395.831 kb on - strand, within CCNA_01266at 1395.831 kb on - strand, within CCNA_01266at 1395.882 kb on + strand, within CCNA_01266at 1395.882 kb on + strand, within CCNA_01266at 1395.890 kb on - strand, within CCNA_01266at 1395.890 kb on - strand, within CCNA_01266at 1395.904 kb on + strand, within CCNA_01266at 1395.914 kb on + strand, within CCNA_01266at 1395.914 kb on - strand, within CCNA_01266at 1396.011 kb on - strandat 1396.021 kb on - strandat 1396.021 kb on - strandat 1396.021 kb on - strandat 1396.038 kb on + strand, within CCNA_01267at 1396.115 kb on + strand, within CCNA_01267at 1396.135 kb on + strand, within CCNA_01267at 1396.199 kb on + strand, within CCNA_01267at 1396.208 kb on - strand, within CCNA_01267at 1396.209 kb on - strand, within CCNA_01267at 1396.214 kb on - strand, within CCNA_01267at 1396.221 kb on - strand, within CCNA_01267at 1396.326 kb on + strand, within CCNA_01267at 1396.326 kb on + strand, within CCNA_01267at 1396.326 kb on + strand, within CCNA_01267at 1396.334 kb on - strand, within CCNA_01267at 1396.334 kb on - strand, within CCNA_01267at 1396.334 kb on - strand, within CCNA_01267at 1396.334 kb on - strand, within CCNA_01267at 1396.341 kb on + strand, within CCNA_01267at 1396.341 kb on + strand, within CCNA_01267at 1396.343 kb on + strand, within CCNA_01267at 1396.349 kb on - strand, within CCNA_01267at 1396.349 kb on - strand, within CCNA_01267at 1396.349 kb on - strand, within CCNA_01267at 1396.349 kb on - strand, within CCNA_01267at 1396.404 kb on - strand, within CCNA_01267at 1396.404 kb on - strand, within CCNA_01267at 1396.404 kb on - strand, within CCNA_01267at 1396.405 kb on + strand, within CCNA_01267at 1396.408 kb on - strand, within CCNA_01267at 1396.435 kb on - strand, within CCNA_01267at 1396.435 kb on - strand, within CCNA_01267at 1396.435 kb on - strand, within CCNA_01267at 1396.436 kb on + strand, within CCNA_01267at 1396.454 kb on + strand, within CCNA_01267at 1396.470 kb on + strand, within CCNA_01267at 1396.478 kb on - strand, within CCNA_01267at 1396.499 kb on + strand, within CCNA_01267at 1396.527 kb on + strand, within CCNA_01267at 1396.527 kb on + strand, within CCNA_01267at 1396.527 kb on + strand, within CCNA_01267at 1396.532 kb on + strand, within CCNA_01267at 1396.535 kb on - strand, within CCNA_01267at 1396.535 kb on - strand, within CCNA_01267at 1396.567 kb on - strand, within CCNA_01267at 1396.685 kb on - strandat 1396.733 kb on + strandat 1396.798 kb on - strandat 1396.800 kb on + strandat 1396.869 kb on + strand, within CCNA_01268at 1396.962 kb on - strand, within CCNA_01268at 1396.962 kb on - strand, within CCNA_01268at 1396.965 kb on + strand, within CCNA_01268at 1397.001 kb on + strand, within CCNA_01268at 1397.009 kb on - strand, within CCNA_01268at 1397.010 kb on - strand, within CCNA_01268at 1397.011 kb on + strand, within CCNA_01268at 1397.016 kb on + strand, within CCNA_01268at 1397.071 kb on - strand, within CCNA_01268at 1397.071 kb on - strand, within CCNA_01268at 1397.101 kb on - strand, within CCNA_01268at 1397.103 kb on - strand, within CCNA_01268at 1397.103 kb on - strand, within CCNA_01268at 1397.103 kb on - strand, within CCNA_01268at 1397.103 kb on - strand, within CCNA_01268at 1397.103 kb on - strand, within CCNA_01268at 1397.103 kb on - strand, within CCNA_01268at 1397.208 kb on + strand, within CCNA_01268at 1397.208 kb on + strand, within CCNA_01268at 1397.216 kb on - strand, within CCNA_01268at 1397.218 kb on + strand, within CCNA_01268at 1397.256 kb on + strandat 1397.276 kb on - strandat 1397.276 kb on - strandat 1397.300 kb on + strandat 1397.330 kb on - strandat 1397.390 kb on + strandat 1397.398 kb on - strandat 1397.398 kb on - strandat 1397.398 kb on - strandat 1397.398 kb on - strandat 1397.398 kb on - strandat 1397.398 kb on - strandat 1397.458 kb on + strandat 1397.525 kb on + strandat 1397.533 kb on - strandat 1397.535 kb on + strandat 1397.536 kb on + strandat 1397.543 kb on - strandat 1397.557 kb on - strandat 1397.593 kb on + strandat 1397.602 kb on - strandat 1397.605 kb on + strand, within CCNA_01269at 1397.660 kb on - strand, within CCNA_01269

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 2 ug/mL
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1,395,624 + -0.2
1,395,624 + -0.6
1,395,632 - +0.1
1,395,651 + CCNA_01266 0.15 -0.6
1,395,659 - CCNA_01266 0.17 +0.2
1,395,673 + CCNA_01266 0.21 +0.6
1,395,673 + CCNA_01266 0.21 +0.7
1,395,673 + CCNA_01266 0.21 +0.4
1,395,673 + CCNA_01266 0.21 +0.6
1,395,678 + CCNA_01266 0.23 +0.9
1,395,681 - CCNA_01266 0.24 +0.1
1,395,681 - CCNA_01266 0.24 +0.2
1,395,686 - CCNA_01266 0.25 +0.6
1,395,713 - CCNA_01266 0.32 +1.4
1,395,713 - CCNA_01266 0.32 +0.0
1,395,713 - CCNA_01266 0.32 -1.8
1,395,713 - CCNA_01266 0.32 -0.0
1,395,776 + CCNA_01266 0.50 -0.7
1,395,823 + CCNA_01266 0.63 +0.8
1,395,831 - CCNA_01266 0.66 +0.5
1,395,831 - CCNA_01266 0.66 -0.0
1,395,882 + CCNA_01266 0.80 -1.2
1,395,882 + CCNA_01266 0.80 +1.5
1,395,890 - CCNA_01266 0.82 +0.1
1,395,890 - CCNA_01266 0.82 +1.2
1,395,904 + CCNA_01266 0.86 +0.3
1,395,914 + CCNA_01266 0.89 -0.6
1,395,914 - CCNA_01266 0.89 +0.5
1,396,011 - +0.1
1,396,021 - +0.5
1,396,021 - +0.9
1,396,021 - +0.3
1,396,038 + CCNA_01267 0.12 +0.8
1,396,115 + CCNA_01267 0.22 +2.3
1,396,135 + CCNA_01267 0.25 -1.5
1,396,199 + CCNA_01267 0.34 -2.3
1,396,208 - CCNA_01267 0.35 +0.4
1,396,209 - CCNA_01267 0.35 +0.5
1,396,214 - CCNA_01267 0.36 +0.1
1,396,221 - CCNA_01267 0.37 +1.9
1,396,326 + CCNA_01267 0.51 -1.0
1,396,326 + CCNA_01267 0.51 -1.8
1,396,326 + CCNA_01267 0.51 -0.5
1,396,334 - CCNA_01267 0.52 +1.8
1,396,334 - CCNA_01267 0.52 +1.6
1,396,334 - CCNA_01267 0.52 +0.2
1,396,334 - CCNA_01267 0.52 -1.0
1,396,341 + CCNA_01267 0.53 -0.8
1,396,341 + CCNA_01267 0.53 -0.6
1,396,343 + CCNA_01267 0.53 -1.5
1,396,349 - CCNA_01267 0.54 -0.9
1,396,349 - CCNA_01267 0.54 +1.1
1,396,349 - CCNA_01267 0.54 +2.9
1,396,349 - CCNA_01267 0.54 +0.6
1,396,404 - CCNA_01267 0.62 +2.0
1,396,404 - CCNA_01267 0.62 +0.4
1,396,404 - CCNA_01267 0.62 +0.3
1,396,405 + CCNA_01267 0.62 +0.6
1,396,408 - CCNA_01267 0.62 -0.3
1,396,435 - CCNA_01267 0.66 -0.9
1,396,435 - CCNA_01267 0.66 +0.2
1,396,435 - CCNA_01267 0.66 -0.3
1,396,436 + CCNA_01267 0.66 +0.9
1,396,454 + CCNA_01267 0.68 -0.8
1,396,470 + CCNA_01267 0.70 -0.6
1,396,478 - CCNA_01267 0.72 -0.8
1,396,499 + CCNA_01267 0.74 -0.3
1,396,527 + CCNA_01267 0.78 -0.5
1,396,527 + CCNA_01267 0.78 +1.2
1,396,527 + CCNA_01267 0.78 +0.2
1,396,532 + CCNA_01267 0.79 -0.1
1,396,535 - CCNA_01267 0.79 +0.4
1,396,535 - CCNA_01267 0.79 +0.3
1,396,567 - CCNA_01267 0.84 +0.9
1,396,685 - +0.0
1,396,733 + -0.5
1,396,798 - -1.5
1,396,800 + +0.5
1,396,869 + CCNA_01268 0.21 +1.1
1,396,962 - CCNA_01268 0.39 -0.1
1,396,962 - CCNA_01268 0.39 +0.2
1,396,965 + CCNA_01268 0.39 -0.6
1,397,001 + CCNA_01268 0.47 +1.0
1,397,009 - CCNA_01268 0.48 -0.3
1,397,010 - CCNA_01268 0.48 +0.0
1,397,011 + CCNA_01268 0.49 -0.7
1,397,016 + CCNA_01268 0.50 -0.4
1,397,071 - CCNA_01268 0.60 -0.8
1,397,071 - CCNA_01268 0.60 +0.2
1,397,101 - CCNA_01268 0.66 -0.7
1,397,103 - CCNA_01268 0.67 +0.2
1,397,103 - CCNA_01268 0.67 -1.0
1,397,103 - CCNA_01268 0.67 -0.3
1,397,103 - CCNA_01268 0.67 +0.3
1,397,103 - CCNA_01268 0.67 +0.1
1,397,103 - CCNA_01268 0.67 -1.9
1,397,208 + CCNA_01268 0.87 -0.1
1,397,208 + CCNA_01268 0.87 -0.5
1,397,216 - CCNA_01268 0.89 -0.1
1,397,218 + CCNA_01268 0.89 +0.7
1,397,256 + -0.8
1,397,276 - +1.5
1,397,276 - +0.5
1,397,300 + -0.5
1,397,330 - -0.3
1,397,390 + -3.1
1,397,398 - -0.7
1,397,398 - +0.3
1,397,398 - +0.2
1,397,398 - +0.4
1,397,398 - +0.1
1,397,398 - -0.2
1,397,458 + -1.1
1,397,525 + -0.1
1,397,533 - -0.5
1,397,535 + -0.8
1,397,536 + -0.0
1,397,543 - -0.2
1,397,557 - -0.4
1,397,593 + -1.5
1,397,602 - +0.3
1,397,605 + CCNA_01269 0.11 +1.3
1,397,660 - CCNA_01269 0.21 -0.5

Or see this region's nucleotide sequence