Experiment: PYE with CHIR-090 2 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00886 and CCNA_00887 are separated by 182 nucleotides CCNA_00887 and CCNA_00888 are separated by 124 nucleotides CCNA_00888 and CCNA_00889 are separated by 3 nucleotides
CCNA_00886: CCNA_00886 - aspartokinase, at 964,937 to 966,184
_00886
CCNA_00887: CCNA_00887 - hypothetical protein, at 966,367 to 966,831
_00887
CCNA_00888: CCNA_00888 - MCP-signal associated domain protein, at 966,956 to 967,309
_00888
CCNA_00889: CCNA_00889 - lumazine-binding domain protein, at 967,313 to 967,756
_00889
Position (kb) 966
967 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 966.178 kb on + strand at 966.178 kb on + strand at 966.178 kb on + strand at 966.178 kb on + strand at 966.178 kb on + strand at 966.186 kb on - strand at 966.186 kb on - strand at 966.186 kb on - strand at 966.194 kb on - strand at 966.228 kb on + strand at 966.236 kb on - strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.246 kb on - strand at 966.246 kb on - strand at 966.246 kb on - strand at 966.246 kb on - strand at 966.246 kb on - strand at 966.246 kb on - strand at 966.254 kb on + strand at 966.254 kb on + strand at 966.254 kb on + strand at 966.262 kb on - strand at 966.262 kb on - strand at 966.262 kb on - strand at 966.262 kb on - strand at 966.269 kb on + strand at 966.277 kb on - strand at 966.277 kb on - strand at 966.279 kb on - strand at 966.279 kb on - strand at 966.336 kb on - strand at 966.344 kb on - strand at 966.349 kb on - strand at 966.349 kb on - strand at 966.349 kb on - strand at 966.368 kb on + strand at 966.376 kb on + strand at 966.386 kb on - strand at 966.396 kb on + strand at 966.396 kb on + strand at 966.454 kb on - strand, within CCNA_00887 at 966.466 kb on - strand, within CCNA_00887 at 966.479 kb on + strand, within CCNA_00887 at 966.512 kb on + strand, within CCNA_00887 at 966.532 kb on + strand, within CCNA_00887 at 966.539 kb on - strand, within CCNA_00887 at 966.609 kb on + strand, within CCNA_00887 at 966.635 kb on - strand, within CCNA_00887 at 966.657 kb on + strand, within CCNA_00887 at 966.690 kb on + strand, within CCNA_00887 at 966.698 kb on - strand, within CCNA_00887 at 966.698 kb on - strand, within CCNA_00887 at 966.704 kb on - strand, within CCNA_00887 at 966.726 kb on + strand, within CCNA_00887 at 966.737 kb on + strand, within CCNA_00887 at 966.763 kb on + strand, within CCNA_00887 at 966.853 kb on + strand at 966.853 kb on + strand at 966.853 kb on + strand at 966.854 kb on + strand at 966.861 kb on - strand at 966.862 kb on - strand at 966.862 kb on - strand at 966.862 kb on - strand at 966.862 kb on - strand at 966.862 kb on - strand at 966.862 kb on - strand at 966.862 kb on - strand at 966.862 kb on - strand at 966.877 kb on + strand at 966.877 kb on + strand at 966.877 kb on + strand at 966.877 kb on + strand at 966.885 kb on - strand at 966.885 kb on - strand at 966.885 kb on - strand at 966.910 kb on + strand at 966.944 kb on - strand at 966.946 kb on + strand at 966.954 kb on - strand at 966.959 kb on + strand at 967.021 kb on - strand, within CCNA_00888 at 967.022 kb on + strand, within CCNA_00888 at 967.022 kb on + strand, within CCNA_00888 at 967.024 kb on + strand, within CCNA_00888 at 967.030 kb on - strand, within CCNA_00888 at 967.032 kb on - strand, within CCNA_00888 at 967.053 kb on + strand, within CCNA_00888 at 967.066 kb on - strand, within CCNA_00888 at 967.101 kb on + strand, within CCNA_00888 at 967.138 kb on + strand, within CCNA_00888 at 967.154 kb on - strand, within CCNA_00888 at 967.259 kb on - strand, within CCNA_00888 at 967.285 kb on + strand at 967.293 kb on - strand at 967.303 kb on + strand at 967.334 kb on - strand at 967.338 kb on + strand at 967.381 kb on + strand, within CCNA_00889 at 967.488 kb on + strand, within CCNA_00889 at 967.555 kb on - strand, within CCNA_00889 at 967.555 kb on - strand, within CCNA_00889 at 967.566 kb on - strand, within CCNA_00889 at 967.569 kb on + strand, within CCNA_00889 at 967.577 kb on - strand, within CCNA_00889 at 967.587 kb on + strand, within CCNA_00889 at 967.605 kb on - strand, within CCNA_00889 at 967.635 kb on + strand, within CCNA_00889 at 967.666 kb on - strand, within CCNA_00889 at 967.680 kb on + strand, within CCNA_00889 at 967.729 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 2 ug/mL remove 966,178 + +0.4 966,178 + +0.0 966,178 + +0.4 966,178 + +0.2 966,178 + +0.2 966,186 - +0.4 966,186 - +0.0 966,186 - -0.9 966,194 - -1.5 966,228 + +0.8 966,236 - +1.0 966,238 + +0.1 966,238 + -0.4 966,238 + -0.7 966,238 + -0.1 966,238 + +0.1 966,238 + -0.1 966,238 + -0.1 966,238 + +0.3 966,238 + +0.0 966,238 + +0.7 966,238 + -0.5 966,238 + +0.0 966,246 - +0.6 966,246 - -0.4 966,246 - +0.3 966,246 - +0.0 966,246 - -0.1 966,246 - +0.8 966,254 + -0.8 966,254 + +0.1 966,254 + -0.2 966,262 - -0.2 966,262 - +1.0 966,262 - -0.6 966,262 - -0.1 966,269 + -0.6 966,277 - -0.5 966,277 - +0.5 966,279 - +1.0 966,279 - +0.8 966,336 - -0.0 966,344 - -0.3 966,349 - +0.2 966,349 - -0.4 966,349 - +0.1 966,368 + -0.2 966,376 + +0.4 966,386 - -0.0 966,396 + -0.3 966,396 + +0.3 966,454 - CCNA_00887 0.19 +0.3 966,466 - CCNA_00887 0.21 +0.4 966,479 + CCNA_00887 0.24 +0.2 966,512 + CCNA_00887 0.31 +0.6 966,532 + CCNA_00887 0.35 +0.5 966,539 - CCNA_00887 0.37 -0.2 966,609 + CCNA_00887 0.52 +2.3 966,635 - CCNA_00887 0.58 +0.9 966,657 + CCNA_00887 0.62 -1.3 966,690 + CCNA_00887 0.69 +0.2 966,698 - CCNA_00887 0.71 +0.7 966,698 - CCNA_00887 0.71 -2.6 966,704 - CCNA_00887 0.72 +1.4 966,726 + CCNA_00887 0.77 +1.1 966,737 + CCNA_00887 0.80 +0.3 966,763 + CCNA_00887 0.85 +0.8 966,853 + -0.3 966,853 + +0.4 966,853 + -0.8 966,854 + -0.2 966,861 - +0.0 966,862 - -0.0 966,862 - -0.2 966,862 - -0.4 966,862 - +2.8 966,862 - -0.1 966,862 - -0.2 966,862 - +0.8 966,862 - -0.1 966,877 + -0.1 966,877 + +0.9 966,877 + +0.2 966,877 + +0.4 966,885 - +0.4 966,885 - +0.2 966,885 - -0.2 966,910 + +0.9 966,944 - -0.8 966,946 + +0.9 966,954 - -1.7 966,959 + +0.2 967,021 - CCNA_00888 0.18 -0.7 967,022 + CCNA_00888 0.19 +0.8 967,022 + CCNA_00888 0.19 +0.4 967,024 + CCNA_00888 0.19 +0.2 967,030 - CCNA_00888 0.21 -0.6 967,032 - CCNA_00888 0.21 +1.3 967,053 + CCNA_00888 0.27 -0.8 967,066 - CCNA_00888 0.31 -1.5 967,101 + CCNA_00888 0.41 +0.3 967,138 + CCNA_00888 0.51 -2.2 967,154 - CCNA_00888 0.56 -0.4 967,259 - CCNA_00888 0.86 +0.6 967,285 + +0.1 967,293 - -0.0 967,303 + +0.8 967,334 - +1.6 967,338 + +0.5 967,381 + CCNA_00889 0.15 +0.5 967,488 + CCNA_00889 0.39 +0.0 967,555 - CCNA_00889 0.55 -1.5 967,555 - CCNA_00889 0.55 -0.5 967,566 - CCNA_00889 0.57 -0.2 967,569 + CCNA_00889 0.58 +0.2 967,577 - CCNA_00889 0.59 -0.2 967,587 + CCNA_00889 0.62 +0.3 967,605 - CCNA_00889 0.66 +0.3 967,635 + CCNA_00889 0.73 -0.0 967,666 - CCNA_00889 0.80 -3.2 967,680 + CCNA_00889 0.83 -0.3 967,729 + +0.6
Or see this region's nucleotide sequence