Experiment: PYE with CHIR-090 2 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00803 and CCNA_00804 are separated by 64 nucleotides CCNA_00804 and CCNA_00805 are separated by 229 nucleotides CCNA_00805 and CCNA_00806 overlap by 1 nucleotides
CCNA_00803: CCNA_00803 - chemotaxis protein cheW, at 867,854 to 868,309
_00803
CCNA_00804: CCNA_00804 - ASC-1 homology domain protein, at 868,374 to 868,859
_00804
CCNA_00805: CCNA_00805 - GTP-binding protein YihA, at 869,089 to 869,778
_00805
CCNA_00806: CCNA_00806 - inner membrane protein translocase component yidC, at 869,778 to 871,625
_00806
Position (kb)
869
870 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 868.100 kb on + strand, within CCNA_00803 at 868.143 kb on - strand, within CCNA_00803 at 868.163 kb on - strand at 868.176 kb on + strand, within CCNA_00803 at 868.188 kb on + strand, within CCNA_00803 at 868.226 kb on - strand, within CCNA_00803 at 868.269 kb on + strand at 868.286 kb on + strand at 868.371 kb on + strand at 868.414 kb on - strand at 868.416 kb on + strand at 868.514 kb on - strand, within CCNA_00804 at 868.566 kb on - strand, within CCNA_00804 at 868.613 kb on - strand, within CCNA_00804 at 868.639 kb on - strand, within CCNA_00804 at 868.646 kb on - strand, within CCNA_00804 at 868.653 kb on + strand, within CCNA_00804 at 868.653 kb on + strand, within CCNA_00804 at 868.667 kb on - strand, within CCNA_00804 at 868.701 kb on - strand, within CCNA_00804 at 868.708 kb on + strand, within CCNA_00804 at 868.716 kb on - strand, within CCNA_00804 at 868.716 kb on - strand, within CCNA_00804 at 868.742 kb on + strand, within CCNA_00804 at 868.742 kb on + strand, within CCNA_00804 at 868.744 kb on + strand, within CCNA_00804 at 868.750 kb on - strand, within CCNA_00804 at 868.797 kb on + strand, within CCNA_00804 at 868.797 kb on + strand, within CCNA_00804 at 868.797 kb on + strand, within CCNA_00804 at 868.805 kb on - strand, within CCNA_00804 at 868.836 kb on + strand at 868.847 kb on - strand at 868.900 kb on + strand at 868.917 kb on - strand at 868.987 kb on + strand at 868.990 kb on - strand at 868.992 kb on + strand at 868.995 kb on + strand at 869.004 kb on - strand at 869.009 kb on + strand at 869.009 kb on + strand at 869.009 kb on + strand at 869.009 kb on + strand at 869.009 kb on + strand at 869.009 kb on + strand at 869.009 kb on + strand at 869.017 kb on - strand at 869.017 kb on - strand at 869.017 kb on - strand at 869.017 kb on - strand at 869.107 kb on - strand at 869.696 kb on + strand, within CCNA_00805 at 869.704 kb on - strand, within CCNA_00805 at 869.758 kb on - strand at 869.830 kb on - strand at 869.847 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 2 ug/mL remove 868,100 + CCNA_00803 0.54 +0.5 868,143 - CCNA_00803 0.63 -0.6 868,163 - -1.1 868,176 + CCNA_00803 0.71 +0.5 868,188 + CCNA_00803 0.73 +1.0 868,226 - CCNA_00803 0.82 -1.1 868,269 + +0.2 868,286 + +0.4 868,371 + -0.0 868,414 - -0.0 868,416 + +0.6 868,514 - CCNA_00804 0.29 +0.7 868,566 - CCNA_00804 0.40 +0.5 868,613 - CCNA_00804 0.49 +0.7 868,639 - CCNA_00804 0.55 +0.4 868,646 - CCNA_00804 0.56 +0.6 868,653 + CCNA_00804 0.57 +0.2 868,653 + CCNA_00804 0.57 -2.3 868,667 - CCNA_00804 0.60 +0.3 868,701 - CCNA_00804 0.67 +0.0 868,708 + CCNA_00804 0.69 +0.5 868,716 - CCNA_00804 0.70 +0.9 868,716 - CCNA_00804 0.70 +0.1 868,742 + CCNA_00804 0.76 +0.2 868,742 + CCNA_00804 0.76 -0.5 868,744 + CCNA_00804 0.76 -0.9 868,750 - CCNA_00804 0.77 +0.2 868,797 + CCNA_00804 0.87 -0.2 868,797 + CCNA_00804 0.87 -0.4 868,797 + CCNA_00804 0.87 +0.3 868,805 - CCNA_00804 0.89 +0.0 868,836 + -0.4 868,847 - -0.0 868,900 + -1.0 868,917 - +0.3 868,987 + -1.0 868,990 - +1.0 868,992 + -0.7 868,995 + +0.5 869,004 - +0.1 869,009 + -1.1 869,009 + -0.3 869,009 + +1.2 869,009 + -0.5 869,009 + +1.2 869,009 + -1.2 869,009 + -0.4 869,017 - +1.7 869,017 - +1.0 869,017 - +3.3 869,017 - -0.1 869,107 - +0.3 869,696 + CCNA_00805 0.88 -1.5 869,704 - CCNA_00805 0.89 -0.5 869,758 - -1.5 869,830 - -0.0 869,847 - +0.2
Or see this region's nucleotide sequence