Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.33x; and D-Glucose 74 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24210 and BWI76_RS24215 are separated by 79 nucleotides BWI76_RS24215 and BWI76_RS24220 are separated by 98 nucleotides BWI76_RS24220 and BWI76_RS24225 are separated by 104 nucleotides
BWI76_RS24210: BWI76_RS24210 - cystathionine gamma-lyase, at 5,046,876 to 5,048,021
_RS24210
BWI76_RS24215: BWI76_RS24215 - LysR family transcriptional regulator, at 5,048,101 to 5,049,000
_RS24215
BWI76_RS24220: BWI76_RS24220 - short chain dehydrogenase, at 5,049,099 to 5,049,701
_RS24220
BWI76_RS24225: BWI76_RS24225 - hypothetical protein, at 5,049,806 to 5,050,144
_RS24225
Position (kb) 5048
5049
5050 Strain fitness (log2 ratio) -1
0
1 at 5047.117 kb on + strand, within BWI76_RS24210 at 5047.185 kb on - strand, within BWI76_RS24210 at 5047.195 kb on - strand, within BWI76_RS24210 at 5047.503 kb on - strand, within BWI76_RS24210 at 5047.596 kb on - strand, within BWI76_RS24210 at 5047.695 kb on + strand, within BWI76_RS24210 at 5047.816 kb on + strand, within BWI76_RS24210 at 5047.850 kb on + strand, within BWI76_RS24210 at 5048.010 kb on - strand at 5048.098 kb on + strand at 5048.098 kb on + strand at 5048.219 kb on + strand, within BWI76_RS24215 at 5048.249 kb on - strand, within BWI76_RS24215 at 5048.352 kb on - strand, within BWI76_RS24215 at 5048.645 kb on + strand, within BWI76_RS24215 at 5048.751 kb on + strand, within BWI76_RS24215 at 5048.872 kb on - strand, within BWI76_RS24215 at 5049.017 kb on - strand at 5049.040 kb on + strand at 5049.154 kb on + strand at 5049.378 kb on + strand, within BWI76_RS24220 at 5049.477 kb on + strand, within BWI76_RS24220 at 5049.549 kb on - strand, within BWI76_RS24220 at 5049.636 kb on + strand, within BWI76_RS24220 at 5049.636 kb on + strand, within BWI76_RS24220 at 5049.639 kb on - strand, within BWI76_RS24220 at 5049.644 kb on - strand at 5049.655 kb on + strand at 5049.853 kb on - strand, within BWI76_RS24225
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.33x; and D-Glucose 74 mM remove 5,047,117 + BWI76_RS24210 0.21 -0.3 5,047,185 - BWI76_RS24210 0.27 -0.2 5,047,195 - BWI76_RS24210 0.28 -0.2 5,047,503 - BWI76_RS24210 0.55 +0.5 5,047,596 - BWI76_RS24210 0.63 -1.4 5,047,695 + BWI76_RS24210 0.71 -0.1 5,047,816 + BWI76_RS24210 0.82 +0.3 5,047,850 + BWI76_RS24210 0.85 +0.2 5,048,010 - -0.0 5,048,098 + +0.4 5,048,098 + -0.9 5,048,219 + BWI76_RS24215 0.13 -0.2 5,048,249 - BWI76_RS24215 0.16 +0.1 5,048,352 - BWI76_RS24215 0.28 -0.6 5,048,645 + BWI76_RS24215 0.60 -0.1 5,048,751 + BWI76_RS24215 0.72 +0.2 5,048,872 - BWI76_RS24215 0.86 -0.5 5,049,017 - +0.3 5,049,040 + -0.2 5,049,154 + -0.1 5,049,378 + BWI76_RS24220 0.46 +0.3 5,049,477 + BWI76_RS24220 0.63 +0.4 5,049,549 - BWI76_RS24220 0.75 -0.0 5,049,636 + BWI76_RS24220 0.89 +0.6 5,049,636 + BWI76_RS24220 0.89 -0.5 5,049,639 - BWI76_RS24220 0.90 +0.1 5,049,644 - +0.5 5,049,655 + -0.1 5,049,853 - BWI76_RS24225 0.14 -0.1
Or see this region's nucleotide sequence