Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.33x; and D-Glucose 74 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20420 and BWI76_RS20425 overlap by 1 nucleotides BWI76_RS20425 and BWI76_RS20430 overlap by 1 nucleotides BWI76_RS20430 and BWI76_RS20435 are separated by 3 nucleotides
BWI76_RS20420: BWI76_RS20420 - elongation factor P hydroxylase, at 4,275,141 to 4,275,689
_RS20420
BWI76_RS20425: BWI76_RS20425 - hypothetical protein, at 4,275,689 to 4,276,498
_RS20425
BWI76_RS20430: BWI76_RS20430 - penicillin-insensitive murein endopeptidase, at 4,276,498 to 4,277,322
_RS20430
BWI76_RS20435: BWI76_RS20435 - chorismate synthase, at 4,277,326 to 4,278,411
_RS20435
Position (kb) 4276
4277
4278 Strain fitness (log2 ratio) -2
-1
0
1 at 4275.916 kb on + strand, within BWI76_RS20425 at 4276.504 kb on + strand at 4277.065 kb on - strand, within BWI76_RS20430 at 4277.133 kb on - strand, within BWI76_RS20430 at 4277.528 kb on + strand, within BWI76_RS20435 at 4278.248 kb on - strand, within BWI76_RS20435
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.33x; and D-Glucose 74 mM remove 4,275,916 + BWI76_RS20425 0.28 +0.5 4,276,504 + +0.0 4,277,065 - BWI76_RS20430 0.69 +0.2 4,277,133 - BWI76_RS20430 0.77 +0.5 4,277,528 + BWI76_RS20435 0.19 -2.3 4,278,248 - BWI76_RS20435 0.85 -1.9
Or see this region's nucleotide sequence