Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.33x; and D-Glucose 74 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09485 and BWI76_RS09490 are separated by 78 nucleotides BWI76_RS09490 and BWI76_RS09495 overlap by 4 nucleotides BWI76_RS09495 and BWI76_RS09500 are separated by 217 nucleotides
BWI76_RS09485: BWI76_RS09485 - 23S rRNA (uracil(747)-C(5))-methyltransferase, at 1,985,319 to 1,986,449
_RS09485
BWI76_RS09490: BWI76_RS09490 - DNA-binding response regulator, at 1,986,528 to 1,987,244
_RS09490
BWI76_RS09495: BWI76_RS09495 - sensor histidine kinase, at 1,987,241 to 1,988,713
_RS09495
BWI76_RS09500: BWI76_RS09500 - arginine ABC transporter substrate-binding protein, at 1,988,931 to 1,989,662
_RS09500
Position (kb) 1987
1988
1989 Strain fitness (log2 ratio) -1
0
1 at 1986.350 kb on - strand at 1986.420 kb on + strand at 1986.548 kb on + strand at 1986.970 kb on + strand, within BWI76_RS09490 at 1986.970 kb on + strand, within BWI76_RS09490 at 1987.433 kb on - strand, within BWI76_RS09495 at 1987.593 kb on - strand, within BWI76_RS09495 at 1987.641 kb on + strand, within BWI76_RS09495 at 1987.649 kb on - strand, within BWI76_RS09495 at 1987.783 kb on + strand, within BWI76_RS09495 at 1987.843 kb on - strand, within BWI76_RS09495 at 1987.910 kb on - strand, within BWI76_RS09495 at 1988.095 kb on - strand, within BWI76_RS09495 at 1989.346 kb on + strand, within BWI76_RS09500 at 1989.354 kb on - strand at 1989.493 kb on + strand, within BWI76_RS09500
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.33x; and D-Glucose 74 mM remove 1,986,350 - +0.2 1,986,420 + -0.1 1,986,548 + +0.6 1,986,970 + BWI76_RS09490 0.62 +0.1 1,986,970 + BWI76_RS09490 0.62 -0.5 1,987,433 - BWI76_RS09495 0.13 +0.7 1,987,593 - BWI76_RS09495 0.24 -0.4 1,987,641 + BWI76_RS09495 0.27 -0.1 1,987,649 - BWI76_RS09495 0.28 -0.2 1,987,783 + BWI76_RS09495 0.37 +0.6 1,987,843 - BWI76_RS09495 0.41 +0.1 1,987,910 - BWI76_RS09495 0.45 -0.2 1,988,095 - BWI76_RS09495 0.58 +0.1 1,989,346 + BWI76_RS09500 0.57 +0.3 1,989,354 - +1.5 1,989,493 + BWI76_RS09500 0.77 +0.1
Or see this region's nucleotide sequence