Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.33x; and D-Glucose 74 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02870 and BWI76_RS02875 are separated by 21 nucleotides BWI76_RS02875 and BWI76_RS02880 are separated by 12 nucleotides BWI76_RS02880 and BWI76_RS02885 are separated by 42 nucleotides
BWI76_RS02870: BWI76_RS02870 - hypothetical protein, at 586,737 to 587,036
_RS02870
BWI76_RS02875: BWI76_RS02875 - membrane protein, at 587,058 to 587,834
_RS02875
BWI76_RS02880: BWI76_RS02880 - membrane protein, at 587,847 to 588,491
_RS02880
BWI76_RS02885: BWI76_RS02885 - dihydroorotase, at 588,534 to 589,667
_RS02885
Position (kb) 587
588
589 Strain fitness (log2 ratio) -1
0
1 at 586.881 kb on - strand, within BWI76_RS02870 at 586.963 kb on + strand at 587.404 kb on + strand, within BWI76_RS02875 at 587.446 kb on + strand, within BWI76_RS02875 at 587.615 kb on + strand, within BWI76_RS02875 at 587.640 kb on - strand, within BWI76_RS02875 at 587.645 kb on - strand, within BWI76_RS02875 at 587.670 kb on - strand, within BWI76_RS02875 at 587.810 kb on - strand at 587.863 kb on - strand at 587.886 kb on + strand at 587.914 kb on - strand, within BWI76_RS02880 at 587.942 kb on - strand, within BWI76_RS02880 at 588.116 kb on - strand, within BWI76_RS02880 at 588.118 kb on + strand, within BWI76_RS02880 at 588.270 kb on + strand, within BWI76_RS02880 at 588.369 kb on - strand, within BWI76_RS02880 at 588.554 kb on - strand at 588.571 kb on + strand at 588.624 kb on - strand at 588.684 kb on + strand, within BWI76_RS02885 at 588.773 kb on - strand, within BWI76_RS02885 at 588.863 kb on + strand, within BWI76_RS02885 at 588.871 kb on - strand, within BWI76_RS02885 at 588.871 kb on - strand, within BWI76_RS02885 at 588.913 kb on - strand, within BWI76_RS02885 at 589.224 kb on + strand, within BWI76_RS02885 at 589.433 kb on - strand, within BWI76_RS02885
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.33x; and D-Glucose 74 mM remove 586,881 - BWI76_RS02870 0.48 -0.5 586,963 + -0.2 587,404 + BWI76_RS02875 0.45 +1.3 587,446 + BWI76_RS02875 0.50 -1.0 587,615 + BWI76_RS02875 0.72 +0.0 587,640 - BWI76_RS02875 0.75 +0.2 587,645 - BWI76_RS02875 0.76 +0.5 587,670 - BWI76_RS02875 0.79 -0.2 587,810 - +0.0 587,863 - +0.1 587,886 + +0.7 587,914 - BWI76_RS02880 0.10 +0.2 587,942 - BWI76_RS02880 0.15 +0.3 588,116 - BWI76_RS02880 0.42 +0.7 588,118 + BWI76_RS02880 0.42 +0.7 588,270 + BWI76_RS02880 0.66 +0.0 588,369 - BWI76_RS02880 0.81 +0.4 588,554 - -0.1 588,571 + -0.0 588,624 - -0.6 588,684 + BWI76_RS02885 0.13 -0.2 588,773 - BWI76_RS02885 0.21 +1.5 588,863 + BWI76_RS02885 0.29 -0.0 588,871 - BWI76_RS02885 0.30 +0.4 588,871 - BWI76_RS02885 0.30 -0.6 588,913 - BWI76_RS02885 0.33 +0.3 589,224 + BWI76_RS02885 0.61 +0.2 589,433 - BWI76_RS02885 0.79 -0.3
Or see this region's nucleotide sequence