Experiment: Phenylacetic 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36450 and BPHYT_RS36455 are separated by 0 nucleotides BPHYT_RS36455 and BPHYT_RS36460 are separated by 12 nucleotides BPHYT_RS36460 and BPHYT_RS36465 are separated by 58 nucleotides BPHYT_RS36465 and BPHYT_RS36470 are separated by 252 nucleotides
BPHYT_RS36450: BPHYT_RS36450 - hypothetical protein, at 101,360 to 102,559
_RS36450
BPHYT_RS36455: BPHYT_RS36455 - hypothetical protein, at 102,560 to 102,778
_RS36455
BPHYT_RS36460: BPHYT_RS36460 - hypothetical protein, at 102,791 to 103,294
_RS36460
BPHYT_RS36465: BPHYT_RS36465 - DNA-binding protein, at 103,353 to 103,673
_RS36465
BPHYT_RS36470: BPHYT_RS36470 - hypothetical protein, at 103,926 to 104,846
_RS36470
Position (kb) 103
104 Strain fitness (log2 ratio) -2
-1
0
1 at 102.558 kb on - strand at 102.741 kb on - strand, within BPHYT_RS36455 at 102.816 kb on - strand at 102.841 kb on - strand at 103.020 kb on - strand, within BPHYT_RS36460 at 103.023 kb on - strand, within BPHYT_RS36460 at 103.261 kb on - strand at 103.261 kb on - strand at 103.293 kb on - strand at 103.322 kb on - strand at 103.482 kb on + strand, within BPHYT_RS36465 at 103.749 kb on + strand at 103.749 kb on + strand at 103.750 kb on - strand at 103.939 kb on + strand at 103.939 kb on - strand at 103.939 kb on - strand at 103.989 kb on + strand at 104.014 kb on - strand at 104.081 kb on + strand, within BPHYT_RS36470 at 104.082 kb on - strand, within BPHYT_RS36470
Per-strain Table
Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C) remove 102,558 - -0.7 102,741 - BPHYT_RS36455 0.83 -2.3 102,816 - -0.8 102,841 - +1.5 103,020 - BPHYT_RS36460 0.45 -0.7 103,023 - BPHYT_RS36460 0.46 -0.9 103,261 - +0.6 103,261 - +0.9 103,293 - -1.3 103,322 - -2.4 103,482 + BPHYT_RS36465 0.40 +0.9 103,749 + -0.3 103,749 + +1.5 103,750 - +0.3 103,939 + -2.0 103,939 - +0.0 103,939 - -1.9 103,989 + -0.8 104,014 - +0.2 104,081 + BPHYT_RS36470 0.17 +0.2 104,082 - BPHYT_RS36470 0.17 -0.6
Or see this region's nucleotide sequence