Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35330

Experiment: Phenylacetic 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS35325 and BPHYT_RS35330 are separated by 74 nucleotidesBPHYT_RS35330 and BPHYT_RS35335 are separated by 89 nucleotides BPHYT_RS35325: BPHYT_RS35325 - amidohydrolase, at 3,523,822 to 3,525,207 _RS35325 BPHYT_RS35330: BPHYT_RS35330 - purine permease, at 3,525,282 to 3,526,622 _RS35330 BPHYT_RS35335: BPHYT_RS35335 - cobalamin biosynthesis protein, at 3,526,712 to 3,527,794 _RS35335 Position (kb) 3525 3526 3527Strain fitness (log2 ratio) -1 0 1 2at 3524.485 kb on - strand, within BPHYT_RS35325at 3524.485 kb on - strand, within BPHYT_RS35325at 3524.485 kb on - strand, within BPHYT_RS35325at 3524.921 kb on - strand, within BPHYT_RS35325at 3526.639 kb on - strandat 3527.187 kb on + strand, within BPHYT_RS35335at 3527.187 kb on + strand, within BPHYT_RS35335at 3527.291 kb on - strand, within BPHYT_RS35335

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C)
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3,524,485 - BPHYT_RS35325 0.48 +0.6
3,524,485 - BPHYT_RS35325 0.48 +0.4
3,524,485 - BPHYT_RS35325 0.48 -0.2
3,524,921 - BPHYT_RS35325 0.79 +0.1
3,526,639 - +2.5
3,527,187 + BPHYT_RS35335 0.44 -1.5
3,527,187 + BPHYT_RS35335 0.44 +0.1
3,527,291 - BPHYT_RS35335 0.53 -0.2

Or see this region's nucleotide sequence