Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34965

Experiment: Phenylacetic 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS34955 and BPHYT_RS34960 are separated by 0 nucleotidesBPHYT_RS34960 and BPHYT_RS34965 overlap by 1 nucleotidesBPHYT_RS34965 and BPHYT_RS34970 overlap by 8 nucleotides BPHYT_RS34955: BPHYT_RS34955 - alpha/beta hydrolase, at 3,441,820 to 3,442,710 _RS34955 BPHYT_RS34960: BPHYT_RS34960 - IclR family transcriptional regulator, at 3,442,711 to 3,443,595 _RS34960 BPHYT_RS34965: BPHYT_RS34965 - short-chain dehydrogenase, at 3,443,595 to 3,444,392 _RS34965 BPHYT_RS34970: BPHYT_RS34970 - hypothetical protein, at 3,444,385 to 3,446,043 _RS34970 Position (kb) 3443 3444 3445Strain fitness (log2 ratio) -1 0 1 2 3at 3443.536 kb on + strandat 3444.315 kb on + strandat 3444.324 kb on - strandat 3444.339 kb on + strandat 3444.727 kb on + strand, within BPHYT_RS34970at 3445.175 kb on - strand, within BPHYT_RS34970at 3445.175 kb on - strand, within BPHYT_RS34970at 3445.238 kb on - strand, within BPHYT_RS34970

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C)
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3,443,536 + +2.8
3,444,315 + +1.2
3,444,324 - +0.1
3,444,339 + -0.8
3,444,727 + BPHYT_RS34970 0.21 +0.7
3,445,175 - BPHYT_RS34970 0.48 -0.5
3,445,175 - BPHYT_RS34970 0.48 +0.7
3,445,238 - BPHYT_RS34970 0.51 +3.3

Or see this region's nucleotide sequence