Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34380

Experiment: Phenylacetic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phenylacetic 5 mM (C)
3,319,617	+		BPHYT_RS34375	0.18	-1.1
3,319,617	+		BPHYT_RS34375	0.18	-0.1
3,319,663	+		BPHYT_RS34375	0.22	-0.3
3,319,663	+		BPHYT_RS34375	0.22	+0.9
3,319,664	-		BPHYT_RS34375	0.22	-0.6
3,319,667	+		BPHYT_RS34375	0.23	-0.3
3,319,667	+		BPHYT_RS34375	0.23	-0.0
3,319,860	-		BPHYT_RS34375	0.42	+0.3
3,319,860	-		BPHYT_RS34375	0.42	-1.2
3,319,967	-		BPHYT_RS34375	0.53	+0.2
3,320,012	+		BPHYT_RS34375	0.57	+0.5
3,320,023	-		BPHYT_RS34375	0.59	-3.7
3,320,105	-		BPHYT_RS34375	0.67	+0.1
3,320,243	+		BPHYT_RS34375	0.81	+0.1
3,320,243	+		BPHYT_RS34375	0.81	-1.8
3,320,243	+		BPHYT_RS34375	0.81	-0.6
3,320,243	+		BPHYT_RS34375	0.81	+1.9
3,320,244	-		BPHYT_RS34375	0.81	-1.2
3,320,244	-		BPHYT_RS34375	0.81	-2.7
3,320,244	-		BPHYT_RS34375	0.81	+0.9
3,320,244	-		BPHYT_RS34375	0.81	-3.0
3,320,430	+				-1.3
3,320,787	-		BPHYT_RS34380	0.15	-0.9
3,321,290	+		BPHYT_RS34380	0.44	-0.5
3,321,291	-		BPHYT_RS34380	0.44	-2.2
3,321,291	-		BPHYT_RS34380	0.44	+0.5
3,321,341	+		BPHYT_RS34380	0.47	-2.3
3,321,342	-		BPHYT_RS34380	0.47	+1.7
3,321,429	-		BPHYT_RS34380	0.52	-0.8
3,321,586	+		BPHYT_RS34380	0.61	+1.2
3,321,677	+		BPHYT_RS34380	0.66	+0.2
3,321,678	-		BPHYT_RS34380	0.66	+1.5
3,321,770	+		BPHYT_RS34380	0.71	+0.5
3,321,842	+		BPHYT_RS34380	0.75	-1.8
3,322,330	-				+0.3
3,322,330	-				+2.4
3,322,374	+				+0.4
3,322,374	+				-0.9
3,322,374	+				-0.1
3,322,375	-				+0.6
3,322,377	+				+4.9
3,322,541	+		BPHYT_RS34385	0.48	-0.0
3,322,542	-		BPHYT_RS34385	0.48	-1.3
3,322,542	-		BPHYT_RS34385	0.48	+0.8
3,322,542	-		BPHYT_RS34385	0.48	+0.0
3,322,542	-		BPHYT_RS34385	0.48	-1.6
3,322,562	+		BPHYT_RS34385	0.55	-0.6
3,322,563	-		BPHYT_RS34385	0.56	-2.0
3,322,587	-		BPHYT_RS34385	0.64	+1.0
3,322,604	+		BPHYT_RS34385	0.71	-0.8
3,322,604	+		BPHYT_RS34385	0.71	+0.1
3,322,604	+		BPHYT_RS34385	0.71	+0.3
3,322,604	+		BPHYT_RS34385	0.71	-2.1
3,322,709	-				+0.2
3,322,944	+				-0.2
3,322,945	-				+1.1