Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34375

Experiment: Phenylacetic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phenylacetic 5 mM (C)
3,318,607	+				+0.2
3,318,607	+				-0.3
3,319,000	+		BPHYT_RS34370	0.59	-1.1
3,319,000	+		BPHYT_RS34370	0.59	+0.8
3,319,001	-		BPHYT_RS34370	0.59	-3.4
3,319,001	-		BPHYT_RS34370	0.59	+0.7
3,319,001	-		BPHYT_RS34370	0.59	+0.6
3,319,018	-		BPHYT_RS34370	0.66	+0.2
3,319,153	+				+0.4
3,319,170	-				+1.2
3,319,228	+				-1.3
3,319,249	-				-0.3
3,319,249	-				-0.7
3,319,275	+				+0.0
3,319,276	-				-0.3
3,319,276	-				+0.2
3,319,330	+				+0.2
3,319,331	-				-0.1
3,319,377	+				-0.6
3,319,446	+				+0.3
3,319,447	-				+0.5
3,319,617	+		BPHYT_RS34375	0.18	-1.1
3,319,617	+		BPHYT_RS34375	0.18	-0.1
3,319,663	+		BPHYT_RS34375	0.22	-0.3
3,319,663	+		BPHYT_RS34375	0.22	+0.9
3,319,664	-		BPHYT_RS34375	0.22	-0.6
3,319,667	+		BPHYT_RS34375	0.23	-0.3
3,319,667	+		BPHYT_RS34375	0.23	-0.0
3,319,860	-		BPHYT_RS34375	0.42	+0.3
3,319,860	-		BPHYT_RS34375	0.42	-1.2
3,319,967	-		BPHYT_RS34375	0.53	+0.2
3,320,012	+		BPHYT_RS34375	0.57	+0.5
3,320,023	-		BPHYT_RS34375	0.59	-3.7
3,320,105	-		BPHYT_RS34375	0.67	+0.1
3,320,243	+		BPHYT_RS34375	0.81	+0.1
3,320,243	+		BPHYT_RS34375	0.81	-1.8
3,320,243	+		BPHYT_RS34375	0.81	-0.6
3,320,243	+		BPHYT_RS34375	0.81	+1.9
3,320,244	-		BPHYT_RS34375	0.81	-1.2
3,320,244	-		BPHYT_RS34375	0.81	-2.7
3,320,244	-		BPHYT_RS34375	0.81	+0.9
3,320,244	-		BPHYT_RS34375	0.81	-3.0
3,320,430	+				-1.3
3,320,787	-		BPHYT_RS34380	0.15	-0.9
3,321,290	+		BPHYT_RS34380	0.44	-0.5
3,321,291	-		BPHYT_RS34380	0.44	-2.2
3,321,291	-		BPHYT_RS34380	0.44	+0.5
3,321,341	+		BPHYT_RS34380	0.47	-2.3
3,321,342	-		BPHYT_RS34380	0.47	+1.7
3,321,429	-		BPHYT_RS34380	0.52	-0.8