Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32875

Experiment: Phenylacetic 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS32865 and BPHYT_RS32870 are separated by 207 nucleotidesBPHYT_RS32870 and BPHYT_RS32875 are separated by 206 nucleotidesBPHYT_RS32875 and BPHYT_RS32880 are separated by 22 nucleotides BPHYT_RS32865: BPHYT_RS32865 - choloylglycine hydrolase, at 2,953,010 to 2,954,089 _RS32865 BPHYT_RS32870: BPHYT_RS32870 - hypothetical protein, at 2,954,297 to 2,954,743 _RS32870 BPHYT_RS32875: BPHYT_RS32875 - GCN5 family acetyltransferase, at 2,954,950 to 2,955,762 _RS32875 BPHYT_RS32880: BPHYT_RS32880 - alanine acetyltransferase, at 2,955,785 to 2,956,360 _RS32880 Position (kb) 2954 2955 2956Strain fitness (log2 ratio) -2 -1 0 1at 2954.006 kb on - strandat 2954.414 kb on + strand, within BPHYT_RS32870at 2954.524 kb on - strand, within BPHYT_RS32870at 2954.660 kb on + strand, within BPHYT_RS32870at 2954.773 kb on + strandat 2955.416 kb on - strand, within BPHYT_RS32875at 2955.419 kb on + strand, within BPHYT_RS32875at 2955.806 kb on - strandat 2956.257 kb on - strand, within BPHYT_RS32880at 2956.283 kb on - strand, within BPHYT_RS32880at 2956.361 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C)
remove
2,954,006 - -1.6
2,954,414 + BPHYT_RS32870 0.26 +1.4
2,954,524 - BPHYT_RS32870 0.51 -2.7
2,954,660 + BPHYT_RS32870 0.81 +0.4
2,954,773 + +0.4
2,955,416 - BPHYT_RS32875 0.57 +1.3
2,955,419 + BPHYT_RS32875 0.58 -1.1
2,955,806 - +0.5
2,956,257 - BPHYT_RS32880 0.82 +1.3
2,956,283 - BPHYT_RS32880 0.86 -1.8
2,956,361 - -0.1

Or see this region's nucleotide sequence