Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30510

Experiment: Phenylacetic 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30500 and BPHYT_RS30505 overlap by 4 nucleotidesBPHYT_RS30505 and BPHYT_RS30510 are separated by 24 nucleotidesBPHYT_RS30510 and BPHYT_RS30515 are separated by 99 nucleotides BPHYT_RS30500: BPHYT_RS30500 - ABC transporter permease, at 2,402,269 to 2,403,177 _RS30500 BPHYT_RS30505: BPHYT_RS30505 - ABC transporter permease, at 2,403,174 to 2,403,968 _RS30505 BPHYT_RS30510: BPHYT_RS30510 - aldehyde dehydrogenase, at 2,403,993 to 2,405,420 _RS30510 BPHYT_RS30515: BPHYT_RS30515 - sorbose dehydrogenase, at 2,405,520 to 2,407,199 _RS30515 Position (kb) 2403 2404 2405 2406Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2403.062 kb on - strand, within BPHYT_RS30500at 2403.253 kb on + strandat 2403.559 kb on - strand, within BPHYT_RS30505at 2403.991 kb on - strandat 2404.546 kb on + strand, within BPHYT_RS30510at 2405.070 kb on + strand, within BPHYT_RS30510at 2405.924 kb on - strand, within BPHYT_RS30515at 2406.261 kb on + strand, within BPHYT_RS30515

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C)
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2,403,062 - BPHYT_RS30500 0.87 -0.6
2,403,253 + +0.9
2,403,559 - BPHYT_RS30505 0.48 -0.4
2,403,991 - -0.4
2,404,546 + BPHYT_RS30510 0.39 +0.8
2,405,070 + BPHYT_RS30510 0.75 -4.0
2,405,924 - BPHYT_RS30515 0.24 -0.2
2,406,261 + BPHYT_RS30515 0.44 +1.0

Or see this region's nucleotide sequence