Experiment: Phenylacetic 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS30295 and BPHYT_RS30300 are separated by 47 nucleotides BPHYT_RS30300 and BPHYT_RS30305 are separated by 2 nucleotides BPHYT_RS30305 and BPHYT_RS30310 are separated by 29 nucleotides
BPHYT_RS30295: BPHYT_RS30295 - acyl-CoA dehydrogenase, at 2,353,149 to 2,354,366
_RS30295
BPHYT_RS30300: BPHYT_RS30300 - FMN reductase, at 2,354,414 to 2,354,950
_RS30300
BPHYT_RS30305: BPHYT_RS30305 - ethyl tert-butyl ether degradation EthD, at 2,354,953 to 2,355,663
_RS30305
BPHYT_RS30310: BPHYT_RS30310 - LysR family transcriptional regulator, at 2,355,693 to 2,356,643
_RS30310
Position (kb)
2354
2355 Strain fitness (log2 ratio)
-1
0
1
2 at 2353.522 kb on - strand, within BPHYT_RS30295 at 2354.205 kb on + strand, within BPHYT_RS30295 at 2354.589 kb on - strand, within BPHYT_RS30300 at 2354.622 kb on + strand, within BPHYT_RS30300 at 2354.874 kb on - strand, within BPHYT_RS30300 at 2355.314 kb on - strand, within BPHYT_RS30305 at 2355.602 kb on - strand at 2355.633 kb on + strand at 2355.634 kb on - strand at 2355.645 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C) remove 2,353,522 - BPHYT_RS30295 0.31 +0.0 2,354,205 + BPHYT_RS30295 0.87 +0.5 2,354,589 - BPHYT_RS30300 0.33 +0.2 2,354,622 + BPHYT_RS30300 0.39 -0.1 2,354,874 - BPHYT_RS30300 0.86 -0.3 2,355,314 - BPHYT_RS30305 0.51 +1.8 2,355,602 - -0.3 2,355,633 + -0.7 2,355,634 - -0.3 2,355,645 + +1.3
Or see this region's nucleotide sequence