Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28505

Experiment: Phenylacetic 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS28500 and BPHYT_RS28505 are separated by 16 nucleotidesBPHYT_RS28505 and BPHYT_RS28510 are separated by 69 nucleotides BPHYT_RS28500: BPHYT_RS28500 - LysR family transcriptional regulator, at 1,948,947 to 1,949,903 _RS28500 BPHYT_RS28505: BPHYT_RS28505 - 5-deoxyglucuronate isomerase, at 1,949,920 to 1,950,750 _RS28505 BPHYT_RS28510: BPHYT_RS28510 - dioxygenase, at 1,950,820 to 1,952,298 _RS28510 Position (kb) 1949 1950 1951Strain fitness (log2 ratio) -1 0 1 2at 1949.451 kb on + strand, within BPHYT_RS28500at 1949.452 kb on - strand, within BPHYT_RS28500at 1950.033 kb on - strand, within BPHYT_RS28505at 1950.041 kb on + strand, within BPHYT_RS28505at 1950.186 kb on - strand, within BPHYT_RS28505at 1951.283 kb on - strand, within BPHYT_RS28510at 1951.377 kb on - strand, within BPHYT_RS28510at 1951.427 kb on + strand, within BPHYT_RS28510at 1951.640 kb on - strand, within BPHYT_RS28510

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C)
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1,949,451 + BPHYT_RS28500 0.53 +0.6
1,949,452 - BPHYT_RS28500 0.53 +1.8
1,950,033 - BPHYT_RS28505 0.14 +0.9
1,950,041 + BPHYT_RS28505 0.15 -0.5
1,950,186 - BPHYT_RS28505 0.32 -0.7
1,951,283 - BPHYT_RS28510 0.31 -1.1
1,951,377 - BPHYT_RS28510 0.38 +1.1
1,951,427 + BPHYT_RS28510 0.41 -0.1
1,951,640 - BPHYT_RS28510 0.55 +0.2

Or see this region's nucleotide sequence