Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28385

Experiment: Phenylacetic 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS28380 and BPHYT_RS28385 are separated by 33 nucleotides BPHYT_RS28380: BPHYT_RS28380 - lon protease, at 1,918,002 to 1,920,416 _RS28380 BPHYT_RS28385: BPHYT_RS28385 - molecular chaperone, at 1,920,450 to 1,920,830 _RS28385 Position (kb) 1920 1921Strain fitness (log2 ratio) -3 -2 -1 0 1at 1919.571 kb on - strand, within BPHYT_RS28380at 1920.654 kb on + strand, within BPHYT_RS28385at 1921.699 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C)
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1,919,571 - BPHYT_RS28380 0.65 +0.3
1,920,654 + BPHYT_RS28385 0.54 -3.5
1,921,699 - -0.9

Or see this region's nucleotide sequence