Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26820
Experiment: Phenylacetic 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Phenylacetic 5 mM (C) |
---|---|---|---|---|---|
remove | |||||
1,588,455 | + | BPHYT_RS26815 | 0.17 | -3.1 | |
1,588,753 | - | BPHYT_RS26815 | 0.46 | +0.2 | |
1,588,860 | + | BPHYT_RS26815 | 0.56 | -1.2 | |
1,589,241 | + | +0.1 | |||
1,589,242 | - | +3.1 | |||
1,589,277 | + | +0.7 | |||
1,589,383 | - | +1.8 | |||
1,589,616 | + | BPHYT_RS26820 | 0.36 | -0.4 | |
1,589,679 | + | BPHYT_RS26820 | 0.43 | +1.1 | |
1,590,139 | + | -1.9 | |||
1,590,254 | + | +1.3 | |||
1,590,255 | - | +0.3 | |||
1,590,628 | + | BPHYT_RS26825 | 0.43 | +0.8 | |
1,590,629 | - | BPHYT_RS26825 | 0.43 | +2.6 | |
1,590,815 | - | BPHYT_RS26825 | 0.68 | +0.5 | |
1,591,063 | + | +0.8 | |||
1,591,063 | + | -0.3 | |||
1,591,064 | - | +0.3 | |||
1,591,130 | + | +2.0 |
Or see this region's nucleotide sequence