Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25235

Experiment: Phenylacetic 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25230 and BPHYT_RS25235 are separated by 138 nucleotidesBPHYT_RS25235 and BPHYT_RS25240 are separated by 163 nucleotides BPHYT_RS25230: BPHYT_RS25230 - formyltetrahydrofolate deformylase, at 1,234,477 to 1,235,352 _RS25230 BPHYT_RS25235: BPHYT_RS25235 - LysR family transcriptional regulator, at 1,235,491 to 1,236,405 _RS25235 BPHYT_RS25240: BPHYT_RS25240 - choline-sulfatase, at 1,236,569 to 1,238,107 _RS25240 Position (kb) 1235 1236 1237Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1234.601 kb on + strand, within BPHYT_RS25230at 1234.817 kb on + strand, within BPHYT_RS25230at 1234.817 kb on + strand, within BPHYT_RS25230at 1235.247 kb on - strand, within BPHYT_RS25230at 1235.444 kb on - strandat 1235.710 kb on - strand, within BPHYT_RS25235at 1236.080 kb on + strand, within BPHYT_RS25235at 1236.427 kb on - strandat 1237.208 kb on + strand, within BPHYT_RS25240at 1237.353 kb on - strand, within BPHYT_RS25240

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C)
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1,234,601 + BPHYT_RS25230 0.14 -0.3
1,234,817 + BPHYT_RS25230 0.39 -0.3
1,234,817 + BPHYT_RS25230 0.39 +0.4
1,235,247 - BPHYT_RS25230 0.88 -0.0
1,235,444 - +2.2
1,235,710 - BPHYT_RS25235 0.24 +1.2
1,236,080 + BPHYT_RS25235 0.64 +1.1
1,236,427 - +0.4
1,237,208 + BPHYT_RS25240 0.42 -3.6
1,237,353 - BPHYT_RS25240 0.51 +0.2

Or see this region's nucleotide sequence