Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24800

Experiment: Phenylacetic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phenylacetic 5 mM (C)
1,130,152	-				-2.5
1,130,185	+				+0.5
1,130,185	+				+0.9
1,130,285	+				+0.5
1,130,329	-				+1.0
1,130,430	+		BPHYT_RS24795	0.10	-0.8
1,130,444	-		BPHYT_RS24795	0.12	-1.1
1,130,650	+		BPHYT_RS24795	0.40	-0.8
1,130,651	-		BPHYT_RS24795	0.40	+1.7
1,130,716	+		BPHYT_RS24795	0.49	+0.5
1,130,717	-		BPHYT_RS24795	0.49	-0.7
1,130,884	-		BPHYT_RS24795	0.72	-3.5
1,131,008	-		BPHYT_RS24795	0.88	+0.5
1,131,013	+		BPHYT_RS24795	0.89	-0.0
1,131,155	-				+0.9
1,131,264	+		BPHYT_RS24800	0.12	-0.5
1,131,301	-		BPHYT_RS24800	0.15	-1.2
1,131,301	-		BPHYT_RS24800	0.15	+0.4
1,131,318	+		BPHYT_RS24800	0.16	-0.9
1,131,318	+		BPHYT_RS24800	0.16	-3.0
1,131,319	-		BPHYT_RS24800	0.16	-0.5
1,131,319	-		BPHYT_RS24800	0.16	+0.4
1,132,081	-		BPHYT_RS24800	0.68	-4.7
1,132,183	-		BPHYT_RS24800	0.75	+0.3
1,132,190	-		BPHYT_RS24800	0.76	+0.5
1,132,240	-		BPHYT_RS24800	0.79	-1.6
1,132,306	-		BPHYT_RS24800	0.84	-1.5
1,132,456	-				-0.0
1,132,459	-				+0.0
1,132,552	-				-0.2
1,132,625	+				+1.5
1,132,625	+				-0.5
1,132,626	-				-2.0
1,132,776	+				+0.1
1,132,777	-				+1.1
1,132,777	-				-3.5
1,132,941	+		BPHYT_RS24805	0.13	+0.5
1,132,942	-		BPHYT_RS24805	0.13	-0.1
1,133,013	+		BPHYT_RS24805	0.16	+0.1
1,133,013	+		BPHYT_RS24805	0.16	-1.7
1,133,014	-		BPHYT_RS24805	0.16	+3.9
1,133,014	-		BPHYT_RS24805	0.16	-0.5
1,133,014	-		BPHYT_RS24805	0.16	+0.4
1,133,349	+		BPHYT_RS24805	0.30	-3.4
1,133,449	-		BPHYT_RS24805	0.34	+0.8
1,133,502	+		BPHYT_RS24805	0.36	-0.3
1,133,502	+		BPHYT_RS24805	0.36	+0.9
1,133,503	-		BPHYT_RS24805	0.36	+1.1
1,133,503	-		BPHYT_RS24805	0.36	-0.1