Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22870

Experiment: Phenylacetic 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS22865 and BPHYT_RS22870 are separated by 30 nucleotidesBPHYT_RS22870 and BPHYT_RS22875 are separated by 314 nucleotides BPHYT_RS22865: BPHYT_RS22865 - ATPase, at 687,535 to 688,860 _RS22865 BPHYT_RS22870: BPHYT_RS22870 - copper transporter, at 688,891 to 690,564 _RS22870 BPHYT_RS22875: BPHYT_RS22875 - hypothetical protein, at 690,879 to 692,795 _RS22875 Position (kb) 688 689 690 691Strain fitness (log2 ratio) -1 0 1at 688.219 kb on - strand, within BPHYT_RS22865at 688.606 kb on - strand, within BPHYT_RS22865at 689.459 kb on + strand, within BPHYT_RS22870at 689.463 kb on - strand, within BPHYT_RS22870at 690.555 kb on + strandat 690.764 kb on - strandat 690.842 kb on - strandat 690.910 kb on + strandat 691.230 kb on + strand, within BPHYT_RS22875

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C)
remove
688,219 - BPHYT_RS22865 0.52 +1.3
688,606 - BPHYT_RS22865 0.81 +0.3
689,459 + BPHYT_RS22870 0.34 +1.3
689,463 - BPHYT_RS22870 0.34 -0.5
690,555 + -0.3
690,764 - -1.2
690,842 - -1.0
690,910 + +0.2
691,230 + BPHYT_RS22875 0.18 +1.0

Or see this region's nucleotide sequence