Experiment: Phenylacetic 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21750 and BPHYT_RS21755 are separated by 119 nucleotides BPHYT_RS21755 and BPHYT_RS21760 overlap by 1 nucleotides BPHYT_RS21760 and BPHYT_RS21765 are separated by 132 nucleotides BPHYT_RS21765 and BPHYT_RS21770 are separated by 204 nucleotides
BPHYT_RS21750: BPHYT_RS21750 - major facilitator transporter, at 436,696 to 438,006
_RS21750
BPHYT_RS21755: BPHYT_RS21755 - twitching motility protein PilT, at 438,126 to 438,503
_RS21755
BPHYT_RS21760: BPHYT_RS21760 - antitoxin, at 438,503 to 438,733
_RS21760
BPHYT_RS21765: BPHYT_RS21765 - IclR family transcriptional regulator, at 438,866 to 439,630
_RS21765
BPHYT_RS21770: BPHYT_RS21770 - aldehyde dehydrogenase, at 439,835 to 441,280
_RS21770
Position (kb) 438
439
440 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 438.128 kb on - strand at 438.151 kb on + strand at 438.480 kb on - strand at 438.480 kb on - strand at 438.540 kb on - strand, within BPHYT_RS21760 at 438.832 kb on - strand at 438.841 kb on + strand at 439.344 kb on - strand, within BPHYT_RS21765 at 439.650 kb on - strand at 439.796 kb on + strand at 439.813 kb on + strand at 440.091 kb on - strand, within BPHYT_RS21770
Per-strain Table
Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C) remove 438,128 - +1.5 438,151 + +1.5 438,480 - -0.8 438,480 - +0.2 438,540 - BPHYT_RS21760 0.16 +0.2 438,832 - -0.5 438,841 + -0.2 439,344 - BPHYT_RS21765 0.62 -1.9 439,650 - +0.5 439,796 + -4.2 439,813 + -0.5 440,091 - BPHYT_RS21770 0.18 +0.4
Or see this region's nucleotide sequence