Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21320

Experiment: Phenylacetic 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21315 and BPHYT_RS21320 are separated by 216 nucleotidesBPHYT_RS21320 and BPHYT_RS21325 are separated by 229 nucleotidesBPHYT_RS21325 and BPHYT_RS21330 are separated by 384 nucleotides BPHYT_RS21315: BPHYT_RS21315 - hypothetical protein, at 341,401 to 341,937 _RS21315 BPHYT_RS21320: BPHYT_RS21320 - alkaline phosphatase, at 342,154 to 344,106 _RS21320 BPHYT_RS21325: BPHYT_RS21325 - hypothetical protein, at 344,336 to 344,674 _RS21325 BPHYT_RS21330: BPHYT_RS21330 - hypothetical protein, at 345,059 to 345,493 _RS21330 Position (kb) 342 343 344 345Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 341.245 kb on + strandat 341.245 kb on + strandat 341.245 kb on + strandat 341.727 kb on + strand, within BPHYT_RS21315at 341.809 kb on + strand, within BPHYT_RS21315at 341.833 kb on - strand, within BPHYT_RS21315at 341.833 kb on - strand, within BPHYT_RS21315at 341.872 kb on - strand, within BPHYT_RS21315at 341.872 kb on - strand, within BPHYT_RS21315at 342.010 kb on + strandat 342.010 kb on + strandat 342.014 kb on - strandat 342.014 kb on - strandat 342.026 kb on + strandat 342.028 kb on + strandat 342.029 kb on - strandat 342.048 kb on - strandat 342.048 kb on - strandat 342.439 kb on + strand, within BPHYT_RS21320at 342.440 kb on - strand, within BPHYT_RS21320at 342.571 kb on + strand, within BPHYT_RS21320at 342.703 kb on + strand, within BPHYT_RS21320at 342.703 kb on + strand, within BPHYT_RS21320at 342.704 kb on - strand, within BPHYT_RS21320at 342.781 kb on + strand, within BPHYT_RS21320at 342.796 kb on - strand, within BPHYT_RS21320at 343.031 kb on - strand, within BPHYT_RS21320at 343.171 kb on + strand, within BPHYT_RS21320at 343.171 kb on + strand, within BPHYT_RS21320at 343.172 kb on - strand, within BPHYT_RS21320at 343.336 kb on + strand, within BPHYT_RS21320at 343.351 kb on + strand, within BPHYT_RS21320at 343.351 kb on + strand, within BPHYT_RS21320at 343.352 kb on - strand, within BPHYT_RS21320at 343.352 kb on - strand, within BPHYT_RS21320at 343.426 kb on + strand, within BPHYT_RS21320at 343.485 kb on + strand, within BPHYT_RS21320at 343.485 kb on + strand, within BPHYT_RS21320at 343.502 kb on + strand, within BPHYT_RS21320at 343.502 kb on + strand, within BPHYT_RS21320at 343.502 kb on + strand, within BPHYT_RS21320at 343.502 kb on + strand, within BPHYT_RS21320at 343.503 kb on - strand, within BPHYT_RS21320at 343.503 kb on - strand, within BPHYT_RS21320at 343.503 kb on - strand, within BPHYT_RS21320at 343.601 kb on - strand, within BPHYT_RS21320at 343.601 kb on - strand, within BPHYT_RS21320at 343.849 kb on + strand, within BPHYT_RS21320at 343.948 kb on + strandat 344.042 kb on - strandat 344.042 kb on - strandat 344.042 kb on - strandat 344.042 kb on - strandat 344.104 kb on + strandat 344.104 kb on + strandat 344.234 kb on + strandat 344.234 kb on + strandat 344.234 kb on + strandat 344.234 kb on + strandat 344.234 kb on + strandat 344.234 kb on + strandat 344.235 kb on - strandat 344.237 kb on - strandat 344.237 kb on - strandat 344.259 kb on - strandat 344.314 kb on + strandat 344.353 kb on + strandat 344.474 kb on + strand, within BPHYT_RS21325at 344.531 kb on + strand, within BPHYT_RS21325at 344.531 kb on + strand, within BPHYT_RS21325at 344.663 kb on + strandat 344.748 kb on + strandat 344.812 kb on + strandat 344.812 kb on + strandat 344.868 kb on - strandat 344.943 kb on + strandat 344.943 kb on + strandat 344.944 kb on - strandat 344.984 kb on + strandat 344.984 kb on + strandat 344.984 kb on + strandat 344.985 kb on - strandat 344.987 kb on - strandat 344.994 kb on - strandat 345.009 kb on + strandat 345.009 kb on + strandat 345.009 kb on + strandat 345.009 kb on + strandat 345.010 kb on - strandat 345.010 kb on - strandat 345.086 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C)
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341,245 + +0.1
341,245 + +0.8
341,245 + -0.0
341,727 + BPHYT_RS21315 0.61 -2.7
341,809 + BPHYT_RS21315 0.76 -2.9
341,833 - BPHYT_RS21315 0.80 -1.1
341,833 - BPHYT_RS21315 0.80 -0.2
341,872 - BPHYT_RS21315 0.88 -1.8
341,872 - BPHYT_RS21315 0.88 +3.6
342,010 + -1.3
342,010 + -3.7
342,014 - +0.0
342,014 - +2.3
342,026 + -0.2
342,028 + +1.6
342,029 - +2.9
342,048 - +1.0
342,048 - +0.2
342,439 + BPHYT_RS21320 0.15 +1.2
342,440 - BPHYT_RS21320 0.15 -0.2
342,571 + BPHYT_RS21320 0.21 +1.1
342,703 + BPHYT_RS21320 0.28 +1.5
342,703 + BPHYT_RS21320 0.28 -1.6
342,704 - BPHYT_RS21320 0.28 -1.1
342,781 + BPHYT_RS21320 0.32 -0.1
342,796 - BPHYT_RS21320 0.33 +2.0
343,031 - BPHYT_RS21320 0.45 +0.3
343,171 + BPHYT_RS21320 0.52 -4.8
343,171 + BPHYT_RS21320 0.52 +1.2
343,172 - BPHYT_RS21320 0.52 -0.2
343,336 + BPHYT_RS21320 0.61 -1.2
343,351 + BPHYT_RS21320 0.61 -0.2
343,351 + BPHYT_RS21320 0.61 -0.4
343,352 - BPHYT_RS21320 0.61 +1.1
343,352 - BPHYT_RS21320 0.61 -1.7
343,426 + BPHYT_RS21320 0.65 +1.0
343,485 + BPHYT_RS21320 0.68 +0.1
343,485 + BPHYT_RS21320 0.68 +0.3
343,502 + BPHYT_RS21320 0.69 -0.2
343,502 + BPHYT_RS21320 0.69 +0.2
343,502 + BPHYT_RS21320 0.69 -2.8
343,502 + BPHYT_RS21320 0.69 +0.2
343,503 - BPHYT_RS21320 0.69 +0.3
343,503 - BPHYT_RS21320 0.69 +0.5
343,503 - BPHYT_RS21320 0.69 -0.7
343,601 - BPHYT_RS21320 0.74 +1.9
343,601 - BPHYT_RS21320 0.74 +1.5
343,849 + BPHYT_RS21320 0.87 -0.2
343,948 + +1.1
344,042 - -0.3
344,042 - -0.7
344,042 - -1.2
344,042 - +0.3
344,104 + -0.1
344,104 + -0.4
344,234 + +0.3
344,234 + -1.5
344,234 + -0.5
344,234 + -0.3
344,234 + +1.5
344,234 + +0.0
344,235 - -0.5
344,237 - +0.7
344,237 - -0.1
344,259 - -3.7
344,314 + -0.4
344,353 + -0.3
344,474 + BPHYT_RS21325 0.41 +0.6
344,531 + BPHYT_RS21325 0.58 +0.0
344,531 + BPHYT_RS21325 0.58 +0.3
344,663 + -0.3
344,748 + -0.4
344,812 + +0.2
344,812 + +0.4
344,868 - +0.2
344,943 + -0.4
344,943 + +0.7
344,944 - +0.1
344,984 + -2.0
344,984 + -0.4
344,984 + +0.6
344,985 - +0.3
344,987 - -0.4
344,994 - +2.8
345,009 + +1.2
345,009 + -0.5
345,009 + -0.7
345,009 + +0.8
345,010 - +0.3
345,010 - -0.3
345,086 - -0.2

Or see this region's nucleotide sequence