Experiment: Phenylacetic 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20770 and BPHYT_RS20775 are separated by 7 nucleotides BPHYT_RS20775 and BPHYT_RS20780 overlap by 4 nucleotides BPHYT_RS20780 and BPHYT_RS20785 are separated by 213 nucleotides
BPHYT_RS20770: BPHYT_RS20770 - hypothetical protein, at 221,214 to 222,383
_RS20770
BPHYT_RS20775: BPHYT_RS20775 - 3-ketoacyl-ACP reductase, at 222,391 to 223,170
_RS20775
BPHYT_RS20780: BPHYT_RS20780 - acyl-CoA dehydrogenase, at 223,167 to 224,312
_RS20780
BPHYT_RS20785: BPHYT_RS20785 - CoA-transferase, at 224,526 to 226,013
_RS20785
Position (kb) 223
224
225 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 222.306 kb on + strand at 222.306 kb on + strand at 222.396 kb on - strand at 222.683 kb on + strand, within BPHYT_RS20775 at 222.684 kb on - strand, within BPHYT_RS20775 at 222.887 kb on - strand, within BPHYT_RS20775 at 223.208 kb on + strand at 223.954 kb on + strand, within BPHYT_RS20780 at 223.993 kb on + strand, within BPHYT_RS20780 at 224.194 kb on + strand, within BPHYT_RS20780 at 225.105 kb on + strand, within BPHYT_RS20785 at 225.180 kb on + strand, within BPHYT_RS20785 at 225.180 kb on + strand, within BPHYT_RS20785 at 225.181 kb on - strand, within BPHYT_RS20785 at 225.181 kb on - strand, within BPHYT_RS20785
Per-strain Table
Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C) remove 222,306 + +0.3 222,306 + +0.1 222,396 - -1.1 222,683 + BPHYT_RS20775 0.37 +0.3 222,684 - BPHYT_RS20775 0.38 +3.4 222,887 - BPHYT_RS20775 0.64 +2.4 223,208 + +0.2 223,954 + BPHYT_RS20780 0.69 -0.0 223,993 + BPHYT_RS20780 0.72 +0.2 224,194 + BPHYT_RS20780 0.90 -1.5 225,105 + BPHYT_RS20785 0.39 +0.5 225,180 + BPHYT_RS20785 0.44 -2.5 225,180 + BPHYT_RS20785 0.44 +1.8 225,181 - BPHYT_RS20785 0.44 -1.1 225,181 - BPHYT_RS20785 0.44 +1.5
Or see this region's nucleotide sequence