Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20685

Experiment: Phenylacetic 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20680 and BPHYT_RS20685 are separated by 72 nucleotidesBPHYT_RS20685 and BPHYT_RS20690 are separated by 2 nucleotides BPHYT_RS20680: BPHYT_RS20680 - LacI family transcriptional regulator, at 199,674 to 200,639 _RS20680 BPHYT_RS20685: BPHYT_RS20685 - ribose ABC transporter ATPase, at 200,712 to 202,325 _RS20685 BPHYT_RS20690: BPHYT_RS20690 - ABC transporter permease, at 202,328 to 203,329 _RS20690 Position (kb) 200 201 202 203Strain fitness (log2 ratio) -1 0 1at 200.195 kb on + strand, within BPHYT_RS20680at 200.521 kb on - strand, within BPHYT_RS20680at 200.521 kb on - strand, within BPHYT_RS20680at 200.781 kb on + strandat 201.330 kb on + strand, within BPHYT_RS20685at 201.331 kb on - strand, within BPHYT_RS20685at 201.457 kb on + strand, within BPHYT_RS20685at 201.501 kb on - strand, within BPHYT_RS20685at 202.062 kb on + strandat 202.063 kb on - strand, within BPHYT_RS20685at 202.488 kb on - strand, within BPHYT_RS20690at 202.816 kb on + strand, within BPHYT_RS20690at 203.299 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C)
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200,195 + BPHYT_RS20680 0.54 -0.4
200,521 - BPHYT_RS20680 0.88 -0.9
200,521 - BPHYT_RS20680 0.88 -0.6
200,781 + -1.7
201,330 + BPHYT_RS20685 0.38 +0.1
201,331 - BPHYT_RS20685 0.38 -1.2
201,457 + BPHYT_RS20685 0.46 -0.3
201,501 - BPHYT_RS20685 0.49 -0.2
202,062 + +1.5
202,063 - BPHYT_RS20685 0.84 -0.3
202,488 - BPHYT_RS20690 0.16 -0.6
202,816 + BPHYT_RS20690 0.49 +0.4
203,299 + +1.0

Or see this region's nucleotide sequence