Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19500

Experiment: Phenylacetic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phenylacetic 5 mM (C)
4,387,633	+		BPHYT_RS19495	0.56	+0.3
4,387,634	-		BPHYT_RS19495	0.56	+1.2
4,387,703	-		BPHYT_RS19495	0.60	-0.4
4,388,047	+		BPHYT_RS19495	0.80	-0.2
4,388,071	+		BPHYT_RS19495	0.81	-0.3
4,388,072	-		BPHYT_RS19495	0.81	-1.5
4,388,201	-		BPHYT_RS19495	0.89	+0.0
4,388,233	+				+0.5
4,388,234	-				+0.6
4,388,338	+				-0.9
4,388,339	-				-1.8
4,388,386	+				-1.4
4,388,461	+				-0.0
4,388,533	+				+0.8
4,388,615	-				-2.2
4,388,639	-				+1.5
4,389,206	-		BPHYT_RS19500	0.44	-0.1
4,389,326	-		BPHYT_RS19500	0.52	-0.1
4,389,331	+		BPHYT_RS19500	0.52	+0.7
4,389,332	-		BPHYT_RS19500	0.52	-2.0
4,389,332	-		BPHYT_RS19500	0.52	-0.0
4,389,721	-				+1.9
4,389,721	-		BPHYT_RS19500	0.77	-1.6
4,390,057	+				-0.3
4,390,057	+				-0.4
4,390,057	+				+1.6
4,390,058	-				+0.2
4,390,176	+				-0.3
4,390,177	-				+1.2
4,390,177	-				+0.3
4,390,192	+				-1.1
4,390,192	+				+1.4
4,390,194	+				-0.7
4,390,194	+				-1.1
4,390,195	-				+1.9
4,390,481	+		BPHYT_RS19505	0.29	+0.6
4,390,481	+		BPHYT_RS19505	0.29	-1.0
4,390,482	-		BPHYT_RS19505	0.30	+1.0
4,390,648	+		BPHYT_RS19505	0.48	-0.6
4,390,651	+		BPHYT_RS19505	0.48	+0.7
4,390,651	+		BPHYT_RS19505	0.48	+0.9
4,390,651	+		BPHYT_RS19505	0.48	-1.9
4,390,652	-		BPHYT_RS19505	0.48	-0.3
4,390,652	-		BPHYT_RS19505	0.48	-0.3
4,390,652	-		BPHYT_RS19505	0.48	-3.0
4,390,833	+		BPHYT_RS19505	0.69	-0.8
4,391,037	+				+0.0
4,391,038	-				+1.7