Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19220

Experiment: Phenylacetic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phenylacetic 5 mM (C)
4,315,060	-				-2.5
4,315,142	+				-0.7
4,315,143	-				+0.6
4,315,143	-				+0.6
4,315,143	-				-0.4
4,315,233	+		BPHYT_RS19220	0.11	-0.4
4,315,233	+		BPHYT_RS19220	0.11	-0.2
4,315,234	-		BPHYT_RS19220	0.11	+0.5
4,315,234	-		BPHYT_RS19220	0.11	-0.7
4,315,234	-		BPHYT_RS19220	0.11	-0.1
4,315,240	-		BPHYT_RS19220	0.11	-1.6
4,315,240	-		BPHYT_RS19220	0.11	+1.3
4,315,240	-		BPHYT_RS19220	0.11	+0.2
4,315,272	+		BPHYT_RS19220	0.13	+1.5
4,315,272	+		BPHYT_RS19220	0.13	-2.9
4,315,300	+		BPHYT_RS19220	0.14	-0.1
4,315,380	+		BPHYT_RS19220	0.18	+0.4
4,315,475	-		BPHYT_RS19220	0.22	-0.3
4,315,475	-		BPHYT_RS19220	0.22	+2.0
4,315,485	-		BPHYT_RS19220	0.23	-0.1
4,315,485	-		BPHYT_RS19220	0.23	+0.0
4,315,560	+		BPHYT_RS19220	0.26	-0.0
4,315,573	+		BPHYT_RS19220	0.27	+0.9
4,315,573	+		BPHYT_RS19220	0.27	-0.3
4,315,573	+				-0.1
4,315,573	+		BPHYT_RS19220	0.27	+2.9
4,315,573	+		BPHYT_RS19220	0.27	+0.5
4,315,573	+		BPHYT_RS19220	0.27	+0.4
4,315,573	+		BPHYT_RS19220	0.27	-0.0
4,315,573	+		BPHYT_RS19220	0.27	+0.4
4,315,574	-		BPHYT_RS19220	0.27	+1.0
4,315,575	+		BPHYT_RS19220	0.27	+0.4
4,315,575	+		BPHYT_RS19220	0.27	-0.4
4,315,576	-		BPHYT_RS19220	0.27	-2.1
4,315,576	-		BPHYT_RS19220	0.27	-0.0
4,315,618	-		BPHYT_RS19220	0.29	+0.2
4,315,643	-		BPHYT_RS19220	0.30	+0.4
4,315,643	-		BPHYT_RS19220	0.30	+0.4
4,315,646	+		BPHYT_RS19220	0.30	-1.1
4,315,646	+		BPHYT_RS19220	0.30	-1.9
4,315,647	-		BPHYT_RS19220	0.30	+0.1
4,315,740	+		BPHYT_RS19220	0.34	+0.2
4,315,935	-		BPHYT_RS19220	0.43	+0.2
4,316,189	+		BPHYT_RS19220	0.55	-0.4
4,316,190	-		BPHYT_RS19220	0.55	-0.7
4,316,338	+		BPHYT_RS19220	0.62	-0.8
4,316,338	+		BPHYT_RS19220	0.62	+1.2
4,316,339	-		BPHYT_RS19220	0.62	-0.3
4,316,360	+		BPHYT_RS19220	0.63	+0.2
4,316,476	+		BPHYT_RS19220	0.68	+1.2
4,316,476	+		BPHYT_RS19220	0.68	-0.5
4,316,572	-		BPHYT_RS19220	0.73	-1.0
4,316,572	-		BPHYT_RS19220	0.73	+1.1
4,316,575	+		BPHYT_RS19220	0.73	-1.9
4,316,575	+		BPHYT_RS19220	0.73	-3.3
4,316,575	+		BPHYT_RS19220	0.73	-0.9
4,316,575	+		BPHYT_RS19220	0.73	+2.2
4,316,575	+		BPHYT_RS19220	0.73	+0.6
4,316,576	-		BPHYT_RS19220	0.73	-1.0
4,316,576	-		BPHYT_RS19220	0.73	-0.6
4,316,576	-		BPHYT_RS19220	0.73	+0.9
4,316,576	-		BPHYT_RS19220	0.73	-1.2
4,316,631	-		BPHYT_RS19220	0.75	+0.2
4,316,631	-		BPHYT_RS19220	0.75	-0.1
4,316,632	+		BPHYT_RS19220	0.75	+3.3
4,316,633	-		BPHYT_RS19220	0.75	-1.6
4,316,852	+		BPHYT_RS19220	0.85	+0.8
4,317,057	+				-0.3
4,317,190	+				-1.0
4,317,191	-				-1.3
4,317,449	+				+1.9
4,317,450	-				+0.5
4,317,517	+				-0.4
4,317,521	+				-0.7
4,317,522	-				+0.4
4,317,522	-				+1.4
4,317,541	+				-0.5
4,317,542	-				-0.4
4,317,620	+				-1.6
4,317,620	+				+1.4
4,317,620	+				-1.4
4,317,621	-				+4.2
4,317,621	-				-1.4
4,317,662	-				+0.6
4,317,662	-				+0.3
4,317,713	+				-0.8
4,317,713	+				+1.5
4,317,755	+				-2.4
4,317,822	-		BPHYT_RS19225	0.17	+2.1
4,317,867	+		BPHYT_RS19225	0.23	+1.9
4,317,867	+		BPHYT_RS19225	0.23	+0.1
4,317,941	+		BPHYT_RS19225	0.31	+0.2
4,317,956	+		BPHYT_RS19225	0.33	+2.4
4,318,022	+		BPHYT_RS19225	0.40	-1.1
4,318,022	+		BPHYT_RS19225	0.40	+0.3
4,318,022	+		BPHYT_RS19225	0.40	+1.5
4,318,023	-		BPHYT_RS19225	0.41	+0.1
4,318,028	+		BPHYT_RS19225	0.41	+1.3
4,318,148	+		BPHYT_RS19225	0.55	+0.1