Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18345

Experiment: Phenylacetic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phenylacetic 5 mM (C)
4,126,098	-		BPHYT_RS18340	0.57	-1.1
4,126,266	+		BPHYT_RS18340	0.74	-2.1
4,126,631	-				+0.7
4,126,666	+				-0.7
4,126,771	+				+1.3
4,126,982	+				+0.2
4,126,983	-				+0.6
4,127,227	+		BPHYT_RS18345	0.16	+0.2
4,127,273	+		BPHYT_RS18345	0.19	+1.6
4,127,273	+		BPHYT_RS18345	0.19	-0.4
4,127,274	-		BPHYT_RS18345	0.19	-0.7
4,127,274	-		BPHYT_RS18345	0.19	-1.3
4,127,630	+		BPHYT_RS18345	0.44	-0.8
4,127,687	+		BPHYT_RS18345	0.48	+0.9
4,127,687	+		BPHYT_RS18345	0.48	+0.3
4,127,688	-		BPHYT_RS18345	0.48	+0.8
4,127,702	+		BPHYT_RS18345	0.49	+0.5
4,127,702	+		BPHYT_RS18345	0.49	-0.1
4,127,703	-		BPHYT_RS18345	0.49	+0.4
4,127,703	-		BPHYT_RS18345	0.49	+0.9
4,127,703	-		BPHYT_RS18345	0.49	-0.4
4,127,703	-		BPHYT_RS18345	0.49	-1.6
4,127,809	+		BPHYT_RS18345	0.56	+1.0
4,127,810	-		BPHYT_RS18345	0.56	-0.1
4,127,861	-		BPHYT_RS18345	0.60	-1.8
4,128,128	+		BPHYT_RS18345	0.79	-0.7
4,128,155	+		BPHYT_RS18345	0.81	-1.4
4,128,155	+		BPHYT_RS18345	0.81	+0.5
4,128,156	-		BPHYT_RS18345	0.81	-1.1
4,128,239	+		BPHYT_RS18345	0.86	+0.9
4,128,320	+				-0.3
4,128,401	+				+1.0
4,128,401	+				-0.1
4,128,402	-				-1.2
4,128,431	+				+0.3
4,128,431	+				+1.1
4,128,431	+				-0.1
4,128,432	-				+0.3
4,128,457	+				+0.1
4,128,458	-				+1.3
4,128,458	-				+1.1
4,128,458	-				+0.3
4,128,485	+				+0.2
4,128,498	+				-0.0
4,128,498	+				+0.6
4,128,498	+				-0.5
4,128,499	-				+1.0
4,128,499	-				-0.8
4,128,499	-				+1.4
4,128,499	-				-2.1
4,128,679	+				+0.3
4,128,766	+		BPHYT_RS18350	0.17	+0.4
4,128,766	+		BPHYT_RS18350	0.17	-1.3
4,128,767	-		BPHYT_RS18350	0.17	+1.6
4,128,767	-		BPHYT_RS18350	0.17	-0.6
4,129,036	+		BPHYT_RS18350	0.38	+0.4
4,129,039	+		BPHYT_RS18350	0.39	-0.5
4,129,040	-				+0.3
4,129,096	+		BPHYT_RS18350	0.43	-2.7
4,129,097	-				-0.4
4,129,097	-		BPHYT_RS18350	0.43	+0.5
4,129,097	-		BPHYT_RS18350	0.43	+0.6
4,129,342	+		BPHYT_RS18350	0.63	-0.5
4,129,343	-		BPHYT_RS18350	0.63	+1.0
4,129,343	-		BPHYT_RS18350	0.63	-0.6