Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18250

Experiment: Phenylacetic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phenylacetic 5 mM (C)
4,104,656	+		BPHYT_RS18245	0.66	+0.2
4,104,683	+		BPHYT_RS18245	0.68	+0.9
4,104,683	+		BPHYT_RS18245	0.68	+0.1
4,104,683	+		BPHYT_RS18245	0.68	-0.2
4,104,684	-		BPHYT_RS18245	0.68	+0.4
4,104,938	+		BPHYT_RS18245	0.84	-0.5
4,104,938	+		BPHYT_RS18245	0.84	+0.4
4,104,938	+		BPHYT_RS18245	0.84	-0.7
4,104,938	+		BPHYT_RS18245	0.84	+0.4
4,104,938	+		BPHYT_RS18245	0.84	-1.7
4,104,939	-		BPHYT_RS18245	0.84	+0.5
4,104,939	-		BPHYT_RS18245	0.84	-3.3
4,104,939	-		BPHYT_RS18245	0.84	-2.9
4,105,028	+		BPHYT_RS18245	0.89	+0.3
4,105,028	+				+0.5
4,105,028	+		BPHYT_RS18245	0.89	-0.1
4,105,028	+		BPHYT_RS18245	0.89	+0.7
4,105,028	+				+0.4
4,105,028	+		BPHYT_RS18245	0.89	-0.3
4,105,029	-		BPHYT_RS18245	0.89	+1.0
4,105,029	-		BPHYT_RS18245	0.89	+1.3
4,105,189	+				-1.5
4,105,190	-				+0.7
4,105,195	+				+0.3
4,105,259	+				+2.9
4,105,259	+				-0.5
4,105,259	+				-0.1
4,105,260	-				+0.0
4,105,376	+				-0.6
4,105,419	+				-0.7
4,105,420	-				-0.0
4,105,707	+		BPHYT_RS18250	0.29	-1.3
4,105,711	+		BPHYT_RS18250	0.30	-2.9
4,105,711	+		BPHYT_RS18250	0.30	-1.1
4,105,712	-		BPHYT_RS18250	0.30	-1.7
4,105,713	+		BPHYT_RS18250	0.30	-0.7
4,105,715	+		BPHYT_RS18250	0.30	-0.8
4,105,785	+		BPHYT_RS18250	0.37	-3.3
4,105,785	+		BPHYT_RS18250	0.37	-1.3
4,105,786	-		BPHYT_RS18250	0.37	-0.1
4,105,803	+		BPHYT_RS18250	0.39	-0.5
4,105,896	+		BPHYT_RS18250	0.48	-3.9
4,106,423	+				-3.6
4,106,491	+		BPHYT_RS18255	0.13	-0.9
4,106,576	+		BPHYT_RS18255	0.43	+0.6
4,106,577	-		BPHYT_RS18255	0.44	-0.9
4,106,687	+		BPHYT_RS18255	0.82	+3.4
4,106,735	+				-1.1
4,106,735	+				-1.5
4,106,736	-				-1.8
4,106,736	-				+1.9
4,106,971	+		BPHYT_RS18260	0.28	-2.3
4,106,971	+		BPHYT_RS18260	0.28	-2.3
4,107,007	+		BPHYT_RS18260	0.32	-3.3
4,107,007	+		BPHYT_RS18260	0.32	-3.3
4,107,007	+		BPHYT_RS18260	0.32	+1.9
4,107,101	-		BPHYT_RS18260	0.44	-3.3
4,107,101	-		BPHYT_RS18260	0.44	+0.3
4,107,196	+		BPHYT_RS18260	0.56	-1.7
4,107,196	+		BPHYT_RS18260	0.56	-0.7
4,107,196	+		BPHYT_RS18260	0.56	-2.3
4,107,196	+		BPHYT_RS18260	0.56	+0.1
4,107,197	-		BPHYT_RS18260	0.56	-3.7
4,107,283	+		BPHYT_RS18260	0.67	-1.8
4,107,283	+		BPHYT_RS18260	0.67	-0.5