Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18245

Experiment: Phenylacetic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phenylacetic 5 mM (C)
4,102,915	+		BPHYT_RS18240	0.55	+0.3
4,102,915	+		BPHYT_RS18240	0.55	+0.6
4,102,915	+		BPHYT_RS18240	0.55	-0.2
4,102,915	+		BPHYT_RS18240	0.55	+0.0
4,102,915	+		BPHYT_RS18240	0.55	-0.4
4,102,915	+		BPHYT_RS18240	0.55	+1.2
4,102,916	-		BPHYT_RS18240	0.55	+0.5
4,102,916	-		BPHYT_RS18240	0.55	-0.0
4,102,916	-		BPHYT_RS18240	0.55	+0.4
4,102,916	-		BPHYT_RS18240	0.55	+0.4
4,102,916	-		BPHYT_RS18240	0.55	+1.1
4,102,916	-		BPHYT_RS18240	0.55	+0.5
4,102,916	-		BPHYT_RS18240	0.55	-0.1
4,102,985	-		BPHYT_RS18240	0.60	-0.9
4,103,056	+		BPHYT_RS18240	0.66	+0.2
4,103,056	+		BPHYT_RS18240	0.66	-0.1
4,103,057	-		BPHYT_RS18240	0.66	-0.2
4,103,213	+		BPHYT_RS18240	0.78	+2.0
4,103,244	-		BPHYT_RS18240	0.81	+0.0
4,103,244	-		BPHYT_RS18240	0.81	+0.2
4,103,281	+		BPHYT_RS18240	0.84	+0.6
4,103,717	+				-3.2
4,103,717	+				+0.8
4,103,717	+				+0.2
4,103,718	-				+0.8
4,103,718	-				-0.4
4,103,838	+		BPHYT_RS18245	0.16	-0.0
4,103,839	-				+0.2
4,103,852	+		BPHYT_RS18245	0.17	-0.0
4,103,852	+		BPHYT_RS18245	0.17	+1.4
4,103,852	+		BPHYT_RS18245	0.17	+1.5
4,103,852	+		BPHYT_RS18245	0.17	+0.7
4,103,853	-		BPHYT_RS18245	0.17	+1.9
4,103,853	-		BPHYT_RS18245	0.17	-0.3
4,103,880	+		BPHYT_RS18245	0.19	+0.9
4,103,976	+		BPHYT_RS18245	0.25	-2.7
4,103,976	+		BPHYT_RS18245	0.25	+1.9
4,103,977	-		BPHYT_RS18245	0.25	-0.0
4,103,977	-		BPHYT_RS18245	0.25	+1.3
4,103,978	+		BPHYT_RS18245	0.25	-0.3
4,103,978	+		BPHYT_RS18245	0.25	-1.7
4,103,978	+		BPHYT_RS18245	0.25	+0.9
4,103,978	+		BPHYT_RS18245	0.25	+0.8
4,103,978	+		BPHYT_RS18245	0.25	+0.3
4,103,978	+		BPHYT_RS18245	0.25	+0.9
4,103,978	+		BPHYT_RS18245	0.25	+0.9
4,103,978	+		BPHYT_RS18245	0.25	+1.2
4,103,978	+		BPHYT_RS18245	0.25	+1.9
4,103,978	+		BPHYT_RS18245	0.25	+0.4
4,103,978	+		BPHYT_RS18245	0.25	+0.3
4,103,978	+		BPHYT_RS18245	0.25	-0.7
4,103,978	+		BPHYT_RS18245	0.25	+0.2
4,103,978	+		BPHYT_RS18245	0.25	-0.0
4,103,978	+		BPHYT_RS18245	0.25	-3.0
4,103,979	-		BPHYT_RS18245	0.25	+0.4
4,103,979	-		BPHYT_RS18245	0.25	+0.7
4,103,979	-		BPHYT_RS18245	0.25	-2.1
4,103,979	-		BPHYT_RS18245	0.25	-2.6
4,103,979	-		BPHYT_RS18245	0.25	-0.2
4,103,979	-		BPHYT_RS18245	0.25	+0.8
4,103,982	+		BPHYT_RS18245	0.25	-0.7
4,103,983	-		BPHYT_RS18245	0.25	+0.1
4,104,072	+		BPHYT_RS18245	0.30	-0.0
4,104,116	+		BPHYT_RS18245	0.33	+1.6
4,104,117	-		BPHYT_RS18245	0.33	-0.1
4,104,201	-		BPHYT_RS18245	0.38	-0.5
4,104,237	+		BPHYT_RS18245	0.41	-2.5
4,104,237	+		BPHYT_RS18245	0.41	+0.4
4,104,238	-		BPHYT_RS18245	0.41	+4.1
4,104,238	-		BPHYT_RS18245	0.41	+0.0
4,104,238	-		BPHYT_RS18245	0.41	+0.3
4,104,238	-		BPHYT_RS18245	0.41	-2.5
4,104,238	-		BPHYT_RS18245	0.41	+0.4
4,104,238	-		BPHYT_RS18245	0.41	-2.3
4,104,238	-		BPHYT_RS18245	0.41	-0.3
4,104,238	-		BPHYT_RS18245	0.41	-0.4
4,104,238	-		BPHYT_RS18245	0.41	+1.9
4,104,239	+		BPHYT_RS18245	0.41	+3.0
4,104,239	+		BPHYT_RS18245	0.41	+0.4
4,104,240	-		BPHYT_RS18245	0.41	-0.3
4,104,240	-		BPHYT_RS18245	0.41	-0.7
4,104,240	-		BPHYT_RS18245	0.41	+0.1
4,104,351	+		BPHYT_RS18245	0.48	-2.1
4,104,352	-		BPHYT_RS18245	0.48	-0.0
4,104,353	+		BPHYT_RS18245	0.48	+3.1
4,104,353	+		BPHYT_RS18245	0.48	-0.3
4,104,353	+		BPHYT_RS18245	0.48	+1.4
4,104,354	-		BPHYT_RS18245	0.48	+1.9
4,104,396	+		BPHYT_RS18245	0.50	+0.5
4,104,656	+		BPHYT_RS18245	0.66	+0.2
4,104,683	+		BPHYT_RS18245	0.68	+0.9
4,104,683	+		BPHYT_RS18245	0.68	+0.1
4,104,683	+		BPHYT_RS18245	0.68	-0.2
4,104,684	-		BPHYT_RS18245	0.68	+0.4
4,104,938	+		BPHYT_RS18245	0.84	-0.5
4,104,938	+		BPHYT_RS18245	0.84	+0.4
4,104,938	+		BPHYT_RS18245	0.84	-0.7
4,104,938	+		BPHYT_RS18245	0.84	+0.4
4,104,938	+		BPHYT_RS18245	0.84	-1.7
4,104,939	-		BPHYT_RS18245	0.84	+0.5
4,104,939	-		BPHYT_RS18245	0.84	-3.3
4,104,939	-		BPHYT_RS18245	0.84	-2.9
4,105,028	+		BPHYT_RS18245	0.89	+0.3
4,105,028	+				+0.5
4,105,028	+		BPHYT_RS18245	0.89	-0.1
4,105,028	+		BPHYT_RS18245	0.89	+0.7
4,105,028	+				+0.4
4,105,028	+		BPHYT_RS18245	0.89	-0.3
4,105,029	-		BPHYT_RS18245	0.89	+1.0
4,105,029	-		BPHYT_RS18245	0.89	+1.3
4,105,189	+				-1.5
4,105,190	-				+0.7
4,105,195	+				+0.3
4,105,259	+				+2.9
4,105,259	+				-0.5
4,105,259	+				-0.1
4,105,260	-				+0.0
4,105,376	+				-0.6
4,105,419	+				-0.7
4,105,420	-				-0.0
4,105,707	+		BPHYT_RS18250	0.29	-1.3
4,105,711	+		BPHYT_RS18250	0.30	-2.9
4,105,711	+		BPHYT_RS18250	0.30	-1.1
4,105,712	-		BPHYT_RS18250	0.30	-1.7
4,105,713	+		BPHYT_RS18250	0.30	-0.7
4,105,715	+		BPHYT_RS18250	0.30	-0.8
4,105,785	+		BPHYT_RS18250	0.37	-3.3
4,105,785	+		BPHYT_RS18250	0.37	-1.3
4,105,786	-		BPHYT_RS18250	0.37	-0.1
4,105,803	+		BPHYT_RS18250	0.39	-0.5
4,105,896	+		BPHYT_RS18250	0.48	-3.9