Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17400

Experiment: Phenylacetic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phenylacetic 5 mM (C)
3,941,846	+				-1.8
3,941,847	-				-3.3
3,941,847	-				-4.8
3,942,013	-				-2.1
3,942,027	+				-2.3
3,942,027	+				-3.3
3,942,027	+				-3.1
3,942,028	-				-3.2
3,942,043	-				-5.1
3,942,075	+		BPHYT_RS17395	0.14	-5.8
3,942,619	+				-5.2
3,943,269	+		BPHYT_RS17400	0.64	-1.8
3,943,277	+		BPHYT_RS17400	0.65	+1.8
3,943,277	+		BPHYT_RS17400	0.65	-2.7
3,943,277	+		BPHYT_RS17400	0.65	-5.2
3,943,278	-		BPHYT_RS17400	0.65	-4.2
3,943,278	-		BPHYT_RS17400	0.65	-5.5
3,943,358	+		BPHYT_RS17400	0.72	-1.8
3,943,359	-		BPHYT_RS17400	0.72	-4.6
3,943,517	+		BPHYT_RS17400	0.88	-4.5
3,943,518	-		BPHYT_RS17400	0.88	-3.7
3,943,518	-		BPHYT_RS17400	0.88	-3.5
3,943,648	+				-0.6
3,943,661	-				-5.7
3,943,672	+				+2.9
3,943,672	+				+0.4
3,943,672	+				-1.5
3,943,672	+				+0.1
3,943,672	+				-0.4
3,943,673	-				-2.8
3,943,673	-				-4.9
3,943,673	-				-2.9
3,943,673	-				-0.8
3,943,673	-				-2.7
3,943,694	-				-4.5
3,943,985	+		BPHYT_RS17405	0.40	-1.9
3,944,492	-				-3.1
3,944,492	-				+2.5
3,944,618	+		BPHYT_RS17410	0.18	-0.0
3,944,622	+		BPHYT_RS17410	0.19	+0.1
3,944,623	-		BPHYT_RS17410	0.19	-0.2