Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16935

Experiment: Phenylacetic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phenylacetic 5 mM (C)
3,839,556	+		BPHYT_RS16930	0.52	+1.3
3,839,557	-		BPHYT_RS16930	0.52	+0.6
3,839,558	+		BPHYT_RS16930	0.52	-2.1
3,839,558	+		BPHYT_RS16930	0.52	-1.4
3,839,558	+		BPHYT_RS16930	0.52	-2.9
3,839,558	+		BPHYT_RS16930	0.52	+1.5
3,839,558	+		BPHYT_RS16930	0.52	+1.2
3,839,558	+		BPHYT_RS16930	0.52	+0.1
3,839,558	+		BPHYT_RS16930	0.52	-0.0
3,839,559	-		BPHYT_RS16930	0.52	-1.0
3,839,559	-		BPHYT_RS16930	0.52	-1.2
3,839,559	-		BPHYT_RS16930	0.52	+1.0
3,839,561	-		BPHYT_RS16930	0.52	+0.2
3,839,563	-		BPHYT_RS16930	0.52	+0.5
3,839,684	+		BPHYT_RS16930	0.60	-0.7
3,839,711	+		BPHYT_RS16930	0.62	+0.9
3,839,711	+		BPHYT_RS16930	0.62	+0.1
3,839,711	+		BPHYT_RS16930	0.62	+0.2
3,839,711	+		BPHYT_RS16930	0.62	+0.9
3,839,711	+		BPHYT_RS16930	0.62	+0.9
3,839,712	-		BPHYT_RS16930	0.62	+1.9
3,839,712	-		BPHYT_RS16930	0.62	-0.2
3,840,135	-		BPHYT_RS16930	0.90	+0.5
3,840,267	+				+1.8
3,840,331	+				-0.2
3,840,345	+				+0.4
3,840,345	+				+0.3
3,840,346	-				+0.7
3,840,346	-				+0.1
3,840,412	+				+0.3
3,840,413	-				+4.6
3,840,543	+		BPHYT_RS16935	0.12	+0.8
3,840,543	+		BPHYT_RS16935	0.12	+0.6
3,840,543	+		BPHYT_RS16935	0.12	+1.6
3,840,543	+		BPHYT_RS16935	0.12	-0.9
3,840,544	-		BPHYT_RS16935	0.12	-0.6
3,840,744	+		BPHYT_RS16935	0.32	+0.2
3,840,924	+		BPHYT_RS16935	0.50	+0.8
3,840,925	-		BPHYT_RS16935	0.50	+2.4
3,841,017	+		BPHYT_RS16935	0.59	-0.5
3,841,017	+		BPHYT_RS16935	0.59	+1.9
3,841,027	+		BPHYT_RS16935	0.60	+0.6
3,841,033	+		BPHYT_RS16935	0.61	+0.3
3,841,444	+				-0.8
3,841,445	-				-1.6
3,841,445	-				-0.0
3,841,445	-				+2.7
3,841,520	+				-1.7
3,841,771	+		BPHYT_RS16940	0.28	+0.9
3,841,772	-		BPHYT_RS16940	0.28	+1.2
3,841,813	+		BPHYT_RS16940	0.33	+0.5
3,842,073	+		BPHYT_RS16940	0.66	-0.2
3,842,073	+		BPHYT_RS16940	0.66	-0.3
3,842,073	+		BPHYT_RS16940	0.66	-0.2
3,842,073	+		BPHYT_RS16940	0.66	-0.6
3,842,074	-		BPHYT_RS16940	0.67	+1.8
3,842,373	+				+0.5
3,842,374	-				-1.0
3,842,419	+		BPHYT_RS16945	0.13	+0.1
3,842,421	+		BPHYT_RS16945	0.13	+0.5
3,842,421	+		BPHYT_RS16945	0.13	-0.5
3,842,422	-		BPHYT_RS16945	0.14	+0.7
3,842,422	-				-1.4