Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16830

Experiment: Phenylacetic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phenylacetic 5 mM (C)
3,817,954	-		BPHYT_RS16825	0.42	+2.0
3,818,037	+		BPHYT_RS16825	0.49	+0.2
3,818,037	+		BPHYT_RS16825	0.49	+1.4
3,818,037	+		BPHYT_RS16825	0.49	-1.0
3,818,038	-		BPHYT_RS16825	0.49	-1.0
3,818,038	-		BPHYT_RS16825	0.49	+0.6
3,818,361	+		BPHYT_RS16825	0.73	-0.1
3,818,430	+		BPHYT_RS16825	0.78	+0.2
3,818,430	+		BPHYT_RS16825	0.78	-0.1
3,818,431	-		BPHYT_RS16825	0.78	+0.1
3,818,482	-		BPHYT_RS16825	0.82	-2.3
3,818,482	-		BPHYT_RS16825	0.82	-0.2
3,818,495	-		BPHYT_RS16825	0.83	-0.2
3,818,495	-		BPHYT_RS16825	0.83	+1.0
3,818,495	-		BPHYT_RS16825	0.83	-1.6
3,818,510	+		BPHYT_RS16825	0.84	+0.6
3,818,511	-		BPHYT_RS16825	0.84	+1.3
3,818,511	-		BPHYT_RS16825	0.84	+0.7
3,818,511	-		BPHYT_RS16825	0.84	-0.4
3,818,783	+				+2.5
3,818,792	+				+0.3
3,818,795	-				-0.5
3,818,795	-				-2.0
3,818,795	-				-3.4
3,818,796	+				-0.2
3,818,797	-				+0.8
3,818,797	-				-0.2
3,818,815	+				+1.0
3,818,815	+				-0.3
3,818,815	+				-1.4
3,818,816	-				-0.6
3,818,816	-				+0.0
3,818,906	+				+0.6
3,819,153	+		BPHYT_RS16830	0.30	+0.1
3,819,153	+		BPHYT_RS16830	0.30	-0.5
3,819,154	-		BPHYT_RS16830	0.30	-0.2
3,819,154	-		BPHYT_RS16830	0.30	+0.7
3,819,225	+		BPHYT_RS16830	0.40	-2.7
3,819,226	-		BPHYT_RS16830	0.40	+2.0
3,819,226	-		BPHYT_RS16830	0.40	+1.9
3,819,226	-		BPHYT_RS16830	0.40	-2.8
3,819,226	-		BPHYT_RS16830	0.40	-1.7
3,819,507	+		BPHYT_RS16830	0.81	-3.1
3,819,507	+		BPHYT_RS16830	0.81	+0.0
3,819,507	+		BPHYT_RS16830	0.81	-0.2
3,819,507	+		BPHYT_RS16830	0.81	+0.0
3,819,585	-				-0.7
3,819,616	-				-2.4
3,819,733	-				-0.0
3,819,869	-		BPHYT_RS16835	0.11	-3.4
3,820,535	+		BPHYT_RS16835	0.77	-2.4
3,820,566	+		BPHYT_RS16835	0.80	-4.9
3,820,567	-		BPHYT_RS16835	0.80	-5.3
3,820,567	-		BPHYT_RS16835	0.80	-4.9
3,820,618	-		BPHYT_RS16835	0.85	-3.9
3,820,618	-		BPHYT_RS16835	0.85	-2.5