Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16575

Experiment: Phenylacetic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phenylacetic 5 mM (C)
3,755,679	+				-3.3
3,755,679	+				-0.1
3,755,680	-				+0.0
3,755,680	-				-0.3
3,755,680	-				+0.9
3,755,709	+				+2.0
3,755,833	+		BPHYT_RS16570	0.12	+0.2
3,755,914	+		BPHYT_RS16570	0.25	+0.2
3,756,166	+		BPHYT_RS16570	0.65	+1.0
3,756,167	-		BPHYT_RS16570	0.66	-0.3
3,756,295	+		BPHYT_RS16570	0.86	-0.2
3,756,296	-		BPHYT_RS16570	0.86	-0.8
3,756,332	+				+0.1
3,756,332	+				+0.7
3,756,375	+				-0.8
3,756,376	-				+0.0
3,756,407	+				-0.7
3,756,407	+				-2.0
3,756,408	-				+0.5
3,756,409	+				-0.2
3,756,533	+				-2.8
3,756,617	+				-1.8
3,756,743	+		BPHYT_RS16575	0.12	-2.0
3,756,743	+		BPHYT_RS16575	0.12	-2.5
3,756,743	+		BPHYT_RS16575	0.12	+0.3
3,756,743	+		BPHYT_RS16575	0.12	-1.2
3,756,743	+		BPHYT_RS16575	0.12	-1.4
3,756,743	+		BPHYT_RS16575	0.12	+0.7
3,756,743	+		BPHYT_RS16575	0.12	-1.3
3,756,743	+		BPHYT_RS16575	0.12	-0.9
3,756,749	+		BPHYT_RS16575	0.12	-2.4
3,756,749	+		BPHYT_RS16575	0.12	-1.3
3,756,749	+		BPHYT_RS16575	0.12	-1.6
3,756,752	+		BPHYT_RS16575	0.12	-1.1
3,757,126	+		BPHYT_RS16575	0.39	+0.1
3,757,230	-		BPHYT_RS16575	0.46	-0.6
3,757,254	-		BPHYT_RS16575	0.48	-3.3
3,757,289	+		BPHYT_RS16575	0.51	-1.6
3,757,289	+		BPHYT_RS16575	0.51	-1.2
3,757,290	-		BPHYT_RS16575	0.51	-3.5
3,757,290	-		BPHYT_RS16575	0.51	+0.7
3,757,472	+		BPHYT_RS16575	0.64	-1.1
3,757,473	-		BPHYT_RS16575	0.64	+1.9
3,757,658	+		BPHYT_RS16575	0.77	-1.1
3,757,658	+		BPHYT_RS16575	0.77	-3.7
3,757,658	+		BPHYT_RS16575	0.77	-0.7
3,757,658	+		BPHYT_RS16575	0.77	+0.4
3,757,658	+		BPHYT_RS16575	0.77	-2.7
3,757,659	-		BPHYT_RS16575	0.77	-0.3
3,757,659	-		BPHYT_RS16575	0.77	-0.1
3,757,659	-		BPHYT_RS16575	0.77	-2.4
3,757,659	-		BPHYT_RS16575	0.77	-1.1
3,757,659	-		BPHYT_RS16575	0.77	+0.2
3,757,660	+		BPHYT_RS16575	0.77	-1.2
3,757,712	+		BPHYT_RS16575	0.81	-1.6
3,757,712	+		BPHYT_RS16575	0.81	-0.9
3,757,805	+		BPHYT_RS16575	0.87	-1.3
3,757,805	+		BPHYT_RS16575	0.87	-1.7
3,757,805	+		BPHYT_RS16575	0.87	-1.8
3,757,805	+		BPHYT_RS16575	0.87	-1.5
3,757,806	-		BPHYT_RS16575	0.87	-1.0
3,757,806	-		BPHYT_RS16575	0.87	-0.4
3,757,806	-		BPHYT_RS16575	0.87	+1.7
3,757,839	-		BPHYT_RS16575	0.90	-1.0
3,757,875	+				-0.8
3,757,876	-				-1.3
3,757,914	+				+1.2
3,757,992	+				-0.5
3,757,992	+				+0.4