Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15920

Experiment: Phenylacetic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phenylacetic 5 mM (C)
3,613,184	+		BPHYT_RS15915	0.36	-0.9
3,613,245	+		BPHYT_RS15915	0.43	-4.1
3,613,281	+		BPHYT_RS15915	0.46	-1.8
3,613,281	+		BPHYT_RS15915	0.46	-2.1
3,613,282	-		BPHYT_RS15915	0.47	-1.7
3,613,350	+		BPHYT_RS15915	0.54	-1.7
3,613,351	-		BPHYT_RS15915	0.54	-1.5
3,613,351	-		BPHYT_RS15915	0.54	-1.5
3,613,351	-		BPHYT_RS15915	0.54	-3.0
3,613,458	+		BPHYT_RS15915	0.65	-5.3
3,613,458	+		BPHYT_RS15915	0.65	-3.1
3,613,512	-		BPHYT_RS15915	0.71	-3.6
3,613,749	+				-2.7
3,613,749	+				-1.5
3,613,749	+				-6.5
3,613,750	-				-4.6
3,613,960	+				+0.3
3,614,122	+				-4.4
3,614,122	+				-3.1
3,614,229	+		BPHYT_RS15920	0.15	-3.7
3,614,296	+		BPHYT_RS15920	0.21	-4.0
3,614,297	-		BPHYT_RS15920	0.21	-2.4
3,614,297	-		BPHYT_RS15920	0.21	-0.2
3,614,297	-		BPHYT_RS15920	0.21	-3.2
3,614,309	-		BPHYT_RS15920	0.22	-1.4
3,614,444	-		BPHYT_RS15920	0.33	-3.4
3,614,446	+		BPHYT_RS15920	0.33	-3.0
3,614,447	-		BPHYT_RS15920	0.33	-4.4
3,614,661	+		BPHYT_RS15920	0.51	-3.4
3,614,662	-		BPHYT_RS15920	0.51	-3.3
3,614,710	+		BPHYT_RS15920	0.55	-2.7
3,614,710	+		BPHYT_RS15920	0.55	-3.8
3,614,711	-		BPHYT_RS15920	0.55	-3.0
3,614,722	+		BPHYT_RS15920	0.56	-3.9
3,614,849	-		BPHYT_RS15920	0.66	-1.9
3,614,875	+		BPHYT_RS15920	0.68	-2.9
3,614,995	+		BPHYT_RS15920	0.78	-1.6
3,614,998	-		BPHYT_RS15920	0.78	-2.7
3,615,051	+		BPHYT_RS15920	0.82	-4.2
3,615,078	-		BPHYT_RS15920	0.85	-2.0
3,615,091	+		BPHYT_RS15920	0.86	-0.3
3,615,091	+		BPHYT_RS15920	0.86	-6.3
3,615,092	-		BPHYT_RS15920	0.86	-1.8
3,615,181	+				-1.8
3,615,181	+				-4.2
3,615,182	-				-1.2
3,615,322	+				-1.3
3,615,489	+				-0.4