Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15655

Experiment: Phenylacetic 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS15650 and BPHYT_RS15655 are separated by 130 nucleotidesBPHYT_RS15655 and BPHYT_RS15660 are separated by 202 nucleotides BPHYT_RS15650: BPHYT_RS15650 - quinolinate synthetase, at 3,548,369 to 3,549,508 _RS15650 BPHYT_RS15655: BPHYT_RS15655 - aminotransferase, at 3,549,639 to 3,550,835 _RS15655 BPHYT_RS15660: BPHYT_RS15660 - mechanosensitive ion channel protein MscS, at 3,551,038 to 3,552,369 _RS15660 Position (kb) 3549 3550 3551Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3548.846 kb on - strand, within BPHYT_RS15650at 3548.919 kb on + strand, within BPHYT_RS15650at 3548.919 kb on + strand, within BPHYT_RS15650at 3548.919 kb on + strand, within BPHYT_RS15650at 3548.919 kb on + strand, within BPHYT_RS15650at 3548.919 kb on + strand, within BPHYT_RS15650at 3548.920 kb on - strand, within BPHYT_RS15650at 3548.920 kb on - strand, within BPHYT_RS15650at 3548.920 kb on - strand, within BPHYT_RS15650at 3548.920 kb on - strand, within BPHYT_RS15650at 3549.054 kb on + strand, within BPHYT_RS15650at 3549.055 kb on - strand, within BPHYT_RS15650at 3549.324 kb on + strand, within BPHYT_RS15650at 3549.324 kb on + strand, within BPHYT_RS15650at 3549.325 kb on - strand, within BPHYT_RS15650at 3549.325 kb on - strand, within BPHYT_RS15650at 3549.325 kb on - strand, within BPHYT_RS15650at 3549.325 kb on - strand, within BPHYT_RS15650at 3549.327 kb on + strand, within BPHYT_RS15650at 3549.327 kb on + strand, within BPHYT_RS15650at 3549.328 kb on - strand, within BPHYT_RS15650at 3549.328 kb on - strand, within BPHYT_RS15650at 3549.328 kb on - strand, within BPHYT_RS15650at 3549.624 kb on + strandat 3550.871 kb on - strandat 3550.905 kb on - strandat 3550.927 kb on + strandat 3550.928 kb on - strandat 3550.951 kb on + strandat 3551.181 kb on + strand, within BPHYT_RS15660at 3551.182 kb on - strand, within BPHYT_RS15660at 3551.182 kb on - strand, within BPHYT_RS15660at 3551.259 kb on + strand, within BPHYT_RS15660at 3551.373 kb on + strand, within BPHYT_RS15660at 3551.374 kb on - strand, within BPHYT_RS15660at 3551.374 kb on - strand, within BPHYT_RS15660at 3551.387 kb on - strand, within BPHYT_RS15660at 3551.418 kb on - strand, within BPHYT_RS15660at 3551.606 kb on + strand, within BPHYT_RS15660at 3551.607 kb on - strand, within BPHYT_RS15660at 3551.607 kb on - strand, within BPHYT_RS15660at 3551.607 kb on - strand, within BPHYT_RS15660at 3551.683 kb on - strand, within BPHYT_RS15660

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C)
remove
3,548,846 - BPHYT_RS15650 0.42 -0.3
3,548,919 + BPHYT_RS15650 0.48 +1.3
3,548,919 + BPHYT_RS15650 0.48 +1.1
3,548,919 + BPHYT_RS15650 0.48 +0.4
3,548,919 + BPHYT_RS15650 0.48 +2.1
3,548,919 + BPHYT_RS15650 0.48 +0.8
3,548,920 - BPHYT_RS15650 0.48 +1.3
3,548,920 - BPHYT_RS15650 0.48 +1.3
3,548,920 - BPHYT_RS15650 0.48 -0.2
3,548,920 - BPHYT_RS15650 0.48 +0.2
3,549,054 + BPHYT_RS15650 0.60 +0.5
3,549,055 - BPHYT_RS15650 0.60 -0.5
3,549,324 + BPHYT_RS15650 0.84 +1.1
3,549,324 + BPHYT_RS15650 0.84 +0.9
3,549,325 - BPHYT_RS15650 0.84 +0.1
3,549,325 - BPHYT_RS15650 0.84 +3.7
3,549,325 - BPHYT_RS15650 0.84 +0.5
3,549,325 - BPHYT_RS15650 0.84 +0.3
3,549,327 + BPHYT_RS15650 0.84 +0.7
3,549,327 + BPHYT_RS15650 0.84 +0.3
3,549,328 - BPHYT_RS15650 0.84 +1.5
3,549,328 - BPHYT_RS15650 0.84 +0.6
3,549,328 - BPHYT_RS15650 0.84 +0.2
3,549,624 + +0.1
3,550,871 - +0.3
3,550,905 - +1.7
3,550,927 + +1.7
3,550,928 - +0.7
3,550,951 + -1.6
3,551,181 + BPHYT_RS15660 0.11 +0.1
3,551,182 - BPHYT_RS15660 0.11 +0.7
3,551,182 - BPHYT_RS15660 0.11 -1.0
3,551,259 + BPHYT_RS15660 0.17 +0.4
3,551,373 + BPHYT_RS15660 0.25 -0.1
3,551,374 - BPHYT_RS15660 0.25 +0.5
3,551,374 - BPHYT_RS15660 0.25 -2.0
3,551,387 - BPHYT_RS15660 0.26 -1.3
3,551,418 - BPHYT_RS15660 0.29 +0.8
3,551,606 + BPHYT_RS15660 0.43 +1.2
3,551,607 - BPHYT_RS15660 0.43 +0.0
3,551,607 - BPHYT_RS15660 0.43 +1.1
3,551,607 - BPHYT_RS15660 0.43 -1.3
3,551,683 - BPHYT_RS15660 0.48 +1.1

Or see this region's nucleotide sequence