Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15130

Experiment: Phenylacetic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phenylacetic 5 mM (C)
3,442,165	-		BPHYT_RS15125	0.29	-0.3
3,442,165	-		BPHYT_RS15125	0.29	-0.3
3,442,288	+		BPHYT_RS15125	0.39	-0.4
3,442,288	+		BPHYT_RS15125	0.39	-0.3
3,442,288	+		BPHYT_RS15125	0.39	+0.3
3,442,381	-		BPHYT_RS15125	0.46	-0.7
3,442,576	-		BPHYT_RS15125	0.62	+0.2
3,442,650	+		BPHYT_RS15125	0.68	-3.9
3,442,705	-		BPHYT_RS15125	0.72	-0.5
3,442,760	+		BPHYT_RS15125	0.77	+0.8
3,442,988	-				-2.7
3,443,076	+				+0.8
3,443,076	+				-2.4
3,443,077	-				-0.5
3,443,077	-				+0.9
3,443,077	-				+0.7
3,443,114	+				+0.1
3,443,114	+				+0.6
3,443,151	-				+1.9
3,443,178	+		BPHYT_RS15130	0.11	-0.8
3,443,179	-		BPHYT_RS15130	0.11	+0.9
3,443,204	+		BPHYT_RS15130	0.13	+0.3
3,443,279	+		BPHYT_RS15130	0.19	-2.7
3,443,279	+		BPHYT_RS15130	0.19	+0.4
3,443,546	+		BPHYT_RS15130	0.41	+0.4
3,443,547	-		BPHYT_RS15130	0.41	-1.3
3,443,547	-		BPHYT_RS15130	0.41	+4.8
3,443,657	+				+0.1
3,443,751	-		BPHYT_RS15130	0.57	-1.7
3,443,870	+		BPHYT_RS15130	0.67	-3.3
3,443,871	-		BPHYT_RS15130	0.67	-1.3
3,443,871	-		BPHYT_RS15130	0.67	-2.3
3,443,961	-		BPHYT_RS15130	0.74	+0.2
3,444,047	+		BPHYT_RS15130	0.81	-0.7
3,444,047	+		BPHYT_RS15130	0.81	+0.8
3,444,048	-		BPHYT_RS15130	0.82	-1.7
3,444,153	-				-2.7
3,444,153	-				-2.2
3,444,316	+				-1.4
3,444,316	+				-0.5
3,444,317	-				+0.5
3,444,541	+		BPHYT_RS15135	0.37	-2.3
3,444,744	+		BPHYT_RS15135	0.65	-1.3
3,444,745	-		BPHYT_RS15135	0.65	-1.7
3,444,745	-		BPHYT_RS15135	0.65	+0.9
3,444,754	+		BPHYT_RS15135	0.66	+0.2
3,444,940	+				+0.1
3,445,192	-		BPHYT_RS15140	0.41	+1.3